Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57220 483 / 1e-170 Glycosyl transferase family 4 protein (.1) AT2G41490 480 / 2e-169 GPT UDP-glcnac-adolichol phosphate glcnac-1-p-transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016077 [exp] 593 / 0 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G045700 [exp] 491 / 9e-174 AT3G57220 566 / 0.0 Glycosyl transferase family 4 protein (.1) Potri.016G042100 [exp] 476 / 4e-167 AT2G41490 562 / 0.0 UDP-glcnac-adolichol phosphate glcnac-1-p-transferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00953 [flax] [poplar] Glycos_transf_4 Glycosyl transferase family 4
Representative CDS sequence Show only first row Show all	>Lus10012300 pacid=23176805 polypeptide=Lus10012300 locus=Lus10012300.g ID=Lus10012300.BGIv1.0 annot-version=v1.0 ATGACTGCTCGGAAGAGAGCTTCAGCGCAGATAGCGAGTGGCGGCGATGCATCCACTGTTAAAGCTGTGGTCTCCAACGGTGATCGTAAAACGAAGGAAG TAGTTTCAGACCCGCCAATCGCACCTCCCAAATTGTTGTTTATCTTGAAGTTGTCCCTCTTGCTTTTAGCACCTTACTGCTATGTCTTCTTCTACCACTA CAAGATCCACCAGGAGCTCCAGAATCCGATCCTTATCAATGCTGCTCTTAGCGTTGCTGGGTTCTTTCTCACTGTCAGGCTGATCCCCGTGGCCTCTAGA TATGTGTCCAGGAGGAATATGTTTGGCTATGATATCAACAAGAAGGGTACTCCTCAAGGCACTGTTAAAGTGCCAGAATCTTTGGGTATTGTTGTTGCGA TAGTCTTCTTGGTGGTGACAATCGTATTCCAATATTTCAACTTCACTGCGGACTCAATTTGGCTTGTTGAATACAATGCGGCGTTAGCATGCATCTGCTT CATGACTCTGCTAGGTTTTGTTGATGATGTCCTTGACATTCCTTGGAGAGTGAAATTAATATTACCATCATTTGCTGCACTCCCGTTGTTAATGGCATAT GCTGGCCATACAACTATTGTCATACCGAAGCCTCTAATCCAATATGTTGGACTGGAGATTTTGGTACACAATATCATGCAAATCGGAGCATCAAATGATC CTGAGAAGCAACAAGCCCACGCCTTCCCTATTTATCTAGTTCAACCCCTACTATCAACCTCCTTGGCTTTACTCTCTTACAATTGGTACCCTTCTTCCGT TTTTGTTGGGGATACCTACACATACTTCGCTGGAATGACTATGGCTGTTGTCGGTATATTGGGTCATTATAGTGAAACACTGTTGATTTTCTTCTTGCCA CAAGTGATAAACTTTCTGTTATCTCTCCCCCAGCTGGCTGGTATTGTCCCTTGTCCAAGGCATCGTCTTCCTAGGTTTGATCCCGACACTGGATTGCTTA CTGGGACTAAGGATGGAACGCTTGTCAATCTTTACTTGAGAATTTTTGGCAAGAAGAAAGAAAATTCTCTATGTGCTCATCTTCTTCTTGTTCAGGCAGT TGGATGTGGCTTTTGCTTCTTGTTGAGGTACTTGCTCACTGGATGGTACAAATGA
AA sequence Show only first row Show all	>Lus10012300 pacid=23176805 polypeptide=Lus10012300 locus=Lus10012300.g ID=Lus10012300.BGIv1.0 annot-version=v1.0 MTARKRASAQIASGGDASTVKAVVSNGDRKTKEVVSDPPIAPPKLLFILKLSLLLLAPYCYVFFYHYKIHQELQNPILINAALSVAGFFLTVRLIPVASR YVSRRNMFGYDINKKGTPQGTVKVPESLGIVVAIVFLVVTIVFQYFNFTADSIWLVEYNAALACICFMTLLGFVDDVLDIPWRVKLILPSFAALPLLMAY AGHTTIVIPKPLIQYVGLEILVHNIMQIGASNDPEKQQAHAFPIYLVQPLLSTSLALLSYNWYPSSVFVGDTYTYFAGMTMAVVGILGHYSETLLIFFLP QVINFLLSLPQLAGIVPCPRHRLPRFDPDTGLLTGTKDGTLVNLYLRIFGKKKENSLCAHLLLVQAVGCGFCFLLRYLLTGWYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41490		GPT	UDP-glcnac-adolichol phosphate...		Lus10012300 [exp]	0	1
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10032520 [exp]	4.4	0.9325
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10012697 [exp]	5.5	0.9233
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10022911 [exp]	6.9	0.9267
AT3G16480		MPPALPHA	mitochondrial processing pepti...		Lus10012926 [exp]	7.2	0.9194
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004937 [exp]	9.7	0.9186
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028093 [exp]	11.0	0.8933
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Lus10034800 [exp]	12.0	0.8879
AT2G38840			Guanylate-binding family prote...		Lus10018755 [exp]	14.7	0.8871
AT3G58640			Mitogen activated protein kina...		Lus10017649 [exp]	15.4	0.8857
AT1G59610		DRP2B, CF1, ADL...	Dynamin related protein 2B, dy...		Lus10007887 [exp]	17.4	0.8968

Compare expression of checked genes

Lus10012300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.