Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25530 410 / 7e-146 GR1, GLYR1, GHBDH, ATGHBDH glyoxylate reductase 1 (.1.2) AT1G17650 276 / 2e-92 GR2, GLYR2 glyoxylate reductase 2 (.1) AT4G29120 126 / 2e-34 6-phosphogluconate dehydrogenase family protein (.1) AT1G18270 91 / 3e-20 ketose-bisphosphate aldolase class-II family protein (.1.2.3) AT4G20930 89 / 4e-20 6-phosphogluconate dehydrogenase family protein (.1) AT1G71170 68 / 4e-13 6-phosphogluconate dehydrogenase family protein (.1) AT1G71180 66 / 2e-12 6-phosphogluconate dehydrogenase family protein (.1) AT3G02360 52 / 2e-07 6-phosphogluconate dehydrogenase family protein (.1.2) AT5G41670 50 / 6e-07 6-phosphogluconate dehydrogenase family protein (.1.2) AT1G64190 50 / 1e-06 6-phosphogluconate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016077 [exp] 426 / 9e-147 AT3G57220 611 / 0.0 Glycosyl transferase family 4 protein (.1) Lus10037629 [exp] 272 / 1e-90 AT1G17650 486 / 9e-174 glyoxylate reductase 2 (.1) Lus10015612 [exp] 275 / 3e-88 AT1G17650 495 / 4e-172 glyoxylate reductase 2 (.1) Lus10001349 [exp] 113 / 1e-29 AT1G71180 335 / 4e-115 6-phosphogluconate dehydrogenase family protein (.1) Lus10012950 [exp] 93 / 6e-22 AT4G29120 456 / 3e-163 6-phosphogluconate dehydrogenase family protein (.1) Lus10023258 [exp] 78 / 2e-16 AT4G20930 479 / 4e-171 6-phosphogluconate dehydrogenase family protein (.1) Lus10034974 [exp] 75 / 3e-16 AT4G29120 201 / 1e-64 6-phosphogluconate dehydrogenase family protein (.1) Lus10002140 [exp] 73 / 3e-14 AT1G18270 1147 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Lus10008753 [exp] 71 / 9e-14 AT1G18270 853 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G197900 [exp] 447 / 2e-160 AT3G25530 463 / 1e-166 glyoxylate reductase 1 (.1.2) Potri.003G040800 [exp] 270 / 6e-90 AT1G17650 508 / 0.0 glyoxylate reductase 2 (.1) Potri.003G038450 [exp] 141 / 7e-42 AT1G17650 217 / 8e-71 glyoxylate reductase 2 (.1) Potri.018G088000 [exp] 128 / 5e-35 AT4G29120 463 / 8e-165 6-phosphogluconate dehydrogenase family protein (.1) Potri.003G036600 [exp] 114 / 3e-32 AT1G17650 158 / 5e-49 glyoxylate reductase 2 (.1) Potri.001G211500 [exp] 104 / 3e-26 AT1G71180 310 / 2e-105 6-phosphogluconate dehydrogenase family protein (.1) Potri.015G037000 [exp] 86 / 1e-18 AT1G18270 1931 / 0.0 ketose-bisphosphate aldolase class-II family protein (.1.2.3) Potri.001G465600 [exp] 82 / 5e-18 AT4G20930 507 / 0.0 6-phosphogluconate dehydrogenase family protein (.1) Potri.004G108880 [exp] 50 / 8e-07 AT3G02360 868 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2) Potri.004G108920 [exp] 49 / 1e-06 AT3G02360 884 / 0.0 6-phosphogluconate dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03446 [flax] [poplar] NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10012301 pacid=23176820 polypeptide=Lus10012301 locus=Lus10012301.g ID=Lus10012301.BGIv1.0 annot-version=v1.0 ATGGAGATAGGATTTTTGGGGTTGGGGATAATGGGTAAGGCTATGTCCATGAACTTGATAAAGAAGGGATTCAAGGTGACTGTTTGGAACAGGACACTCT CCAGGTGTGATGAATTGGTTGAGATGGGTGCATCGGTTGGAGAAACACCAGCTGCTGTGATCAAGAAGTGTAAGATCACCATAGCTATGGTTTCAGATCC TGCAGCTGCTCTCTCCGTGGTGTTCGATAAAAATGGGGTATTGGAGGAGATATGCAGTGGGAAAGGCTACGTAGACATGTCTACTGTGGATCCCGAGACT TCTACCAAGATCAGTGAGGCAATTACGTCAAAAGGTGGCTCCTTTGTAGAGGCTCCTGTTTCGGGAAGCAAGCAACCTGCAGAAGCTGCACAGCTCGTCA TTCTTGCTGCCGGAGACAAGGTTGGAAATGGCGCAAGAATGAAACTTGTTGTTAACATGATCATGGGAAGTATGATGAATGCGTTTTCGGAGGGTCTGGT GTTGGCTGAAAGGAGTGGACTGAACCCTGGTGATCTTCTTGATGTGTTGGATCTTGGTGCCATAGCGGCTCCGATGTTCAAAGGGAAGGGACCAAACATG ATAAAGAGTAGCCATTCACCTGCATTCCCTCTGAAGCATCAGCAGAAGGACATGAGGTTGGCTCTAGCGCTTGGAGATGAGAATGCTGTGTCAATGCCTG TAGCCGCTGCAGCAAATGAGGCATTCAAGAAGGCAAGGAGCATGGGATTAGGTGATCTTGATTTTTCAGCTGTGCATGAGGTTGTGAAGATGCATAAAGA CTGA
AA sequence Show only first row Show all	>Lus10012301 pacid=23176820 polypeptide=Lus10012301 locus=Lus10012301.g ID=Lus10012301.BGIv1.0 annot-version=v1.0 MEIGFLGLGIMGKAMSMNLIKKGFKVTVWNRTLSRCDELVEMGASVGETPAAVIKKCKITIAMVSDPAAALSVVFDKNGVLEEICSGKGYVDMSTVDPET STKISEAITSKGGSFVEAPVSGSKQPAEAAQLVILAAGDKVGNGARMKLVVNMIMGSMMNAFSEGLVLAERSGLNPGDLLDVLDLGAIAAPMFKGKGPNM IKSSHSPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSMGLGDLDFSAVHEVVKMHKD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25530		GR1, GLYR1, GHB...	glyoxylate reductase 1 (.1.2)		Lus10012301 [exp]	0	1
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10007254 [exp]	1.0	0.8549
AT4G09620			Mitochondrial transcription te...		Lus10009420 [exp]	5.3	0.8195
AT2G33390			unknown protein		Lus10011781 [exp]	12.2	0.7768
AT1G52590			Putative thiol-disulphide oxid...		Lus10036091 [exp]	14.2	0.8272
AT3G57220			Glycosyl transferase family 4 ...		Lus10016077 [exp]	16.6	0.8163
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10042470 [exp]	19.2	0.7973
AT5G10530			Concanavalin A-like lectin pro...		Lus10033778 [exp]	20.8	0.7777
					Lus10001769 [exp]	21.5	0.8220
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10009467 [exp]	27.7	0.7765
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10006406 [exp]	30.0	0.7897

Compare expression of checked genes

Lus10012301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.