Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12770 291 / 9e-85 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G12780 287 / 3e-83 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G21660 214 / 3e-60 Chaperone DnaJ-domain superfamily protein (.1) AT4G36520 210 / 9e-56 Chaperone DnaJ-domain superfamily protein (.1) AT1G75310 191 / 1e-49 AUL1 auxilin-like 1, auxin-like 1 protein (.1) AT1G75100 133 / 4e-32 JAC1 J-domain protein required for chloroplast accumulation response 1 (.1) AT1G30280 95 / 4e-20 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012302 [exp] 682 / 0 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016079 [exp] 680 / 0 AT4G12770 664 / 0.0 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016078 [exp] 429 / 2e-129 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10018854 [exp] 226 / 1e-63 AT1G21660 402 / 5e-134 Chaperone DnaJ-domain superfamily protein (.1) Lus10028548 [exp] 222 / 5e-62 AT1G21660 402 / 1e-133 Chaperone DnaJ-domain superfamily protein (.1) Lus10041769 [exp] 206 / 3e-54 AT1G75310 328 / 3e-92 auxilin-like 1, auxin-like 1 protein (.1) Lus10024270 [exp] 174 / 4e-44 AT1G75310 290 / 2e-80 auxilin-like 1, auxin-like 1 protein (.1) Lus10007394 [exp] 171 / 4e-43 AT4G36520 284 / 2e-78 Chaperone DnaJ-domain superfamily protein (.1) Lus10033205 [exp] 164 / 4e-41 AT1G75310 259 / 3e-70 auxilin-like 1, auxin-like 1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G217200 [exp] 341 / 1e-102 AT4G12780 319 / 2e-94 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.014G197600 [exp] 338 / 4e-101 AT4G12780 329 / 1e-97 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.002G079200 [exp] 233 / 5e-67 AT1G21660 351 / 2e-115 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G181700 [exp] 221 / 9e-63 AT1G21660 312 / 3e-100 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G120700 [exp] 219 / 9e-59 AT4G36520 299 / 1e-82 Chaperone DnaJ-domain superfamily protein (.1) Potri.007G022600 [exp] 211 / 4e-56 AT4G36520 306 / 7e-85 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G229300 [exp] 197 / 1e-51 AT4G36520 248 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G033800 [exp] 187 / 2e-48 AT4G36520 241 / 4e-64 Chaperone DnaJ-domain superfamily protein (.1) Potri.014G042600 [exp] 141 / 1e-34 AT1G75100 261 / 2e-77 J-domain protein required for chloroplast accumulation response 1 (.1) Potri.002G134300 [exp] 136 / 9e-33 AT1G75100 192 / 3e-52 J-domain protein required for chloroplast accumulation response 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10012303 pacid=23176813 polypeptide=Lus10012303 locus=Lus10012303.g ID=Lus10012303.BGIv1.0 annot-version=v1.0 ATGGAGGACTTTCCCGGAATCTTAGCGCGGGACTTCGGATTCAAGCCTCAAGGGAAATCCGCTCCCATGGCGCCCCCGCGTAATTCCGACACTATCTTCT CCTCGTCATTCGGTAGACCGGAGCCGACGACGAGATCCGCTTCCTCTTTGTCAAACAAATCGTCGCCTGTCTTCGACGATCACGATCGCGGCGGGGATGG TCTCATGTTCAACGACGTATTCGGCGGGCCGCCTAAGTATGGAGAATCGCGCGGCGGGAATACCCCTTCTTCCTCTGCTTCGTTCGACTACGACTCAATC TTCAAGGACAAGAGTACCAAGTCCTCGCTCCCGGTTTTTGATAAGCCGGTTTACGATGACGACATTTTCGATGGATTGCCGGGGCTGAGGAGTTCGTCTT CCGCTTCTTCTGCTGCAAAGTTCGACGATGTGTTCGCTCCTGTTGGCCATGCTTCTCCCCCCAAGCATAAGTCGATGGAAAGCTCGGCATTTGATGATCT GCTGGGAAATTTGGGGAAGAAGGGGGCGGAATCTCGGCGACAGGCTCCAAAGGTGGAGAAAGATTCTCCTACATTTGATGATTTGCTTCCTGGTTTTGGT CGCAGTAGCTCTCCCAGCCATAGGAAGATCGGTGGATATTTTCGAATCTCAGTTGCTCCGCATTTGATAATGTTGGAAGTGAATTCCTGTTACAGGTCAG CATCTGAGTCCAGTCGGGCAACTAGAGAAACTGCCAGTTCGGTCAAGACAGCTCCTACTACAATTGATGATCCCTTTGTGGTGTTAGAGTCAACATCAGC TCCTGCAACGGCACCATCATTGGAGTCCTTTCCAGATCCATTAGATGAGATTGGTAGATTCAATAGCTCAGGGAGCACAAACGTTGATAGTTCACATGTC CACAGGGGATCGTTTGATGACTTAGATCCTCTTGAAAATCTGTCAAAATCTGTTCCATCAGCTTCAAGCAAGGTTAATGAGAGAGGAAAGGAGAGGAGCC CCTTAAGATCAGGAGCTAGTATGGGCGAGACTTTTTCTGCTCCTAATCAGGATCCGGTTGACAAATATCCGGTGGAGAATTCTAGGAGATACTCACAACA CAATCACCCTGTTGATGATTTTCAGGAAACTCCTTTTGGCATGGCCCATGACCCCAGAAGTGCTAGCAAGCCAGCCACTGCTCCGCCATCATATACCAAT GTCGATGCTGATGATGCATTTCCTTCCCCGGTATCTGAAGAGGTCTCAGAATCAGCTGATGAAATATGGCTCACTGTTTCAGAAATTCCTTTGTTTACTA AGCCCACAAGTGCTCCTCCTCCTTCAAGGCCTCCACCTCCAAGACCACCACGTATGAGTGCACGGAAGAGGTTTAATGAACAGTCTTTCTCGAACTCTCG AAGCCCTAGTTCAGCTCAAGCACCAAGAAGCTCAGCGTCTCAATTTGATGAACTTGACGATTTTGCGACCGGTCGGACCCAAAATAATGCAAATGATCGT GCTGATAATTTTGCTGCTGAAGAGGGGGACACAGACTCTTCTGCGGCTGCTGCATCTGCAGCTGCAATGAAGGATGCTATGGATAAGGCAGAAGCTAAAA TCAGGCACATGAGGGAGAAAGATTATATGAAGGCTTCCAGAAGTAAAGAGTCCACTCAGGTGGATAGAGATGTGCTAGAAGCTGAGCAACAAGAACTAAG GGAAAGGCAAGAGAGGTTAGACCGTGAGAGACAACAGAGTCAGAGGGAGGCGGAAGAACAAGAACAGATTAGACTTCGTGAATTAGAGAGGGAGAGGGAG GAAAAGGAGAGAGAGAGGGCAGCAGCAGAAGCTAAGGAAAGAGCAGAAAGAGCAGCAGCAGAAGCACGAGATAGGGCAAATGCTGGGGCAAGGGAGAAGG AAAGGGATGCCCGAGCTAGAGCAGATCGCGCTGCCGTCGAAAGGGCAGCTTCGGAAGCTCGAGCAAGGGCTGCAGCTGCAGCTAGGTCAAACCAGCAAAA ATACGAGGCACAGCCAAAATATGAAGATGATCTTGAATCATTCTTCAGTTCTCGTCCGAGCAGCGCTCCACGGCCTCGAGCAACCACTCCCGATCCATTC TTTAATACTGCTAACACTAGAGCACCTGAAGCAGCTAAGAGTACATCTGTTGGTTCTACAGCTAGCATGAGAAAAGCATCCTCAGCCACAAACATTGTCG ATGATCTGTCTTCAATTTTTGGAGCTGCCGGAACTGGACAATCTGGAGATTTCCAAGACATTGCAGGGGAGACTGAAGAAAGAAGAAGGGCCAGGTTGGA ACGCCACCAAAGAACTCAGGAGCGCGCGGCAAAAGCATTGGCTGAGAAGAATCAGCGTGACCTGAATGCTCAGATGGAGCAAGAAGAGAGACATAGGATT GCTGAAACTCTGGATTTTGAAATCAAGCGTTGGTCTGCTGGGAAAGAGGGAAATCTACGCGCTCTGCTATCTACACTGCAATATGTATTGTGGCCGGAGT GTGGCTGGCAACCAATTTCATTGACCGACCTGATCACTGCTCCATCCGTTAAAAAAGTTTACAGAAAAGCAACTCTGTGCATTCACCCTGACAAAGTGCA ACAGAAAGGTGCCAATCTTCAACAAAAATACATAGCCGAGAAAGTCTTCGACTTGCTGAAGGAAGCATGGAACAAGTTCAATTCAGAGGAGCTATTTTGA
AA sequence Show only first row Show all	>Lus10012303 pacid=23176813 polypeptide=Lus10012303 locus=Lus10012303.g ID=Lus10012303.BGIv1.0 annot-version=v1.0 MEDFPGILARDFGFKPQGKSAPMAPPRNSDTIFSSSFGRPEPTTRSASSLSNKSSPVFDDHDRGGDGLMFNDVFGGPPKYGESRGGNTPSSSASFDYDSI FKDKSTKSSLPVFDKPVYDDDIFDGLPGLRSSSSASSAAKFDDVFAPVGHASPPKHKSMESSAFDDLLGNLGKKGAESRRQAPKVEKDSPTFDDLLPGFG RSSSPSHRKIGGYFRISVAPHLIMLEVNSCYRSASESSRATRETASSVKTAPTTIDDPFVVLESTSAPATAPSLESFPDPLDEIGRFNSSGSTNVDSSHV HRGSFDDLDPLENLSKSVPSASSKVNERGKERSPLRSGASMGETFSAPNQDPVDKYPVENSRRYSQHNHPVDDFQETPFGMAHDPRSASKPATAPPSYTN VDADDAFPSPVSEEVSESADEIWLTVSEIPLFTKPTSAPPPSRPPPPRPPRMSARKRFNEQSFSNSRSPSSAQAPRSSASQFDELDDFATGRTQNNANDR ADNFAAEEGDTDSSAAAASAAAMKDAMDKAEAKIRHMREKDYMKASRSKESTQVDRDVLEAEQQELRERQERLDRERQQSQREAEEQEQIRLRELERERE EKERERAAAEAKERAERAAAEARDRANAGAREKERDARARADRAAVERAASEARARAAAAARSNQQKYEAQPKYEDDLESFFSSRPSSAPRPRATTPDPF FNTANTRAPEAAKSTSVGSTASMRKASSATNIVDDLSSIFGAAGTGQSGDFQDIAGETEERRRARLERHQRTQERAAKALAEKNQRDLNAQMEQEERHRI AETLDFEIKRWSAGKEGNLRALLSTLQYVLWPECGWQPISLTDLITAPSVKKVYRKATLCIHPDKVQQKGANLQQKYIAEKVFDLLKEAWNKFNSEELF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10012303 [exp]	0	1
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10038067 [exp]	1.7	0.8952
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	2.2	0.8681
AT1G20760			Calcium-binding EF hand family...		Lus10016028 [exp]	2.4	0.8803
AT1G31730			Adaptin family protein (.1)		Lus10035683 [exp]	3.5	0.8746
AT1G31730			Adaptin family protein (.1)		Lus10037271 [exp]	4.2	0.8831
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10023694 [exp]	6.0	0.8547
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Lus10041880 [exp]	7.1	0.8379
AT5G65620			Zincin-like metalloproteases f...		Lus10019236 [exp]	8.8	0.8487
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Lus10033090 [exp]	8.9	0.8638
AT4G02350		SEC15B	exocyst complex component sec1...		Lus10010295 [exp]	9.2	0.8500

Compare expression of checked genes

Lus10012303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.