Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07570 140 / 2e-39 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07568 79 / 6e-19 unknown protein AT5G47530 79 / 2e-16 Auxin-responsive family protein (.1) AT5G35735 78 / 2e-16 Auxin-responsive family protein (.1) AT3G61750 78 / 2e-16 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT4G17280 77 / 4e-16 Auxin-responsive family protein (.1) AT3G25290 72 / 2e-14 Auxin-responsive family protein (.1.2) AT4G12980 70 / 1e-13 Auxin-responsive family protein (.1) AT3G59070 60 / 5e-10 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 47 / 8e-06 Auxin-responsive family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016080 [exp] 261 / 9e-86 AT3G07570 397 / 9e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10001180 [exp] 204 / 2e-63 AT3G07570 377 / 5e-130 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10016081 [exp] 116 / 2e-33 AT3G07568 78 / 5e-21 unknown protein Lus10010120 [exp] 80 / 3e-17 AT3G61750 343 / 5e-117 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10012625 [exp] 81 / 4e-17 AT3G61750 400 / 7e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Lus10002274 [exp] 73 / 1e-14 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10012350 [exp] 72 / 3e-14 AT5G35735 418 / 3e-145 Auxin-responsive family protein (.1) Lus10006398 [exp] 72 / 3e-14 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10001734 [exp] 71 / 6e-14 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G197500 [exp] 176 / 5e-53 AT3G07570 402 / 7e-140 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.014G197400 [exp] 81 / 1e-19 AT3G07568 76 / 4e-20 unknown protein Potri.014G098700 [exp] 86 / 8e-19 AT3G61750 402 / 2e-138 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) Potri.014G162000 [exp] 81 / 2e-17 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.002G222700 [exp] 80 / 6e-17 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 79 / 1e-16 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 79 / 2e-16 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 78 / 2e-16 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 78 / 3e-16 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 71 / 9e-14 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Lus10012305 pacid=23176790 polypeptide=Lus10012305 locus=Lus10012305.g ID=Lus10012305.BGIv1.0 annot-version=v1.0 ATGGTGTCTCAGCAGTCAAGGCTATACATGGCTTTCCAGCTGAACACGTCCCAGCCGTCAAATATATTGCTCTACTCTATGGGGCCGCCGGGGAGGATGC CGGCGCCGCCGACCTACACGTTGACCGAGCACCGGGATAAGGTTTCCACTACCTTGAATTACGTCACAGGAGCCATGGTGGCTCGTTACTTTAAGAACAT GGATCCCTTGTGGTTCTACACCCACGTTTTGGTTCAGTGCTTGGGGTTCATCCTTGGTTTGATTGGAGTCATTACTGGCTTGTTGCTGGAAGACGACCTT GATGCTAGCAATCATGTCTCCACCCACAAAGCTCTCGGCATCTTAGTTCTTGTCTTGGGCTGCCTCCAGGTGATGGCACTGATGCTTCGACCAGAAAAAT CATCCAAGTACAGAGTGTACTGGAATTTCTACCATTTCACGGTGGGAAGGATACTAATGGTGTTTGCAAATAGCCAATGTTTTCTACGGAATTCATCTCG GCGGCGAAGGGAGTGGCTGGAACGGTGGTTATGGAGCCGTCCTCGCTATGTCTGGGGGGAGAAGAGGAGAGAAGAAGGCAACGAGAAAATGTTGAGGACT CGATTAGTATGGTTCACGGCGGGGTTTTCCGTCTCCGGAGCTGCCATTGCACAGTTCGTCGGCCGGGATCTCTGGGCCGAGCGAATCGCTCTCTCATCTC ATGTGAAGCAGAAGATGGATTCTCTCGAAGCTCGGATCTCCAATCTCGAGTCTATCACTGCAAAGAACTCGACTTCTGCTCAGCTCGGGGATGTAAACTG A
AA sequence Show only first row Show all	>Lus10012305 pacid=23176790 polypeptide=Lus10012305 locus=Lus10012305.g ID=Lus10012305.BGIv1.0 annot-version=v1.0 MVSQQSRLYMAFQLNTSQPSNILLYSMGPPGRMPAPPTYTLTEHRDKVSTTLNYVTGAMVARYFKNMDPLWFYTHVLVQCLGFILGLIGVITGLLLEDDL DASNHVSTHKALGILVLVLGCLQVMALMLRPEKSSKYRVYWNFYHFTVGRILMVFANSQCFLRNSSRRRREWLERWLWSRPRYVWGEKRREEGNEKMLRT RLVWFTAGFSVSGAAIAQFVGRDLWAERIALSSHVKQKMDSLEARISNLESITAKNSTSAQLGDVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07570			Cytochrome b561/ferric reducta...		Lus10012305 [exp]	0	1
AT3G01130			unknown protein		Lus10042059 [exp]	5.0	0.8640
AT2G04480			unknown protein		Lus10001750 [exp]	6.3	0.8188
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10033637 [exp]	6.9	0.8277
AT1G67785			unknown protein		Lus10042077 [exp]	7.7	0.8334
AT4G35987			S-adenosyl-L-methionine-depend...		Lus10028446 [exp]	8.1	0.8229
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10027634 [exp]	13.4	0.7942
AT1G13770		RUS3	ROOT UV-B SENSITIVE 3, Protein...		Lus10036909 [exp]	15.1	0.8248
AT5G64180			unknown protein		Lus10008120 [exp]	21.1	0.8051
AT4G20930			6-phosphogluconate dehydrogena...		Lus10038545 [exp]	22.8	0.8202
AT1G02160			Cox19 family protein (CHCH mot...		Lus10024637 [exp]	27.4	0.7796

Compare expression of checked genes

Lus10012305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.