Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07560 149 / 7e-43 APM2, PEX13 ABERRANT PEROXISOME MORPHOLOGY 2, peroxin 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016082 [exp] 222 / 2e-71 AT3G07560 162 / 4e-48 ABERRANT PEROXISOME MORPHOLOGY 2, peroxin 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G197200 [exp] 151 / 9e-44 AT3G07560 171 / 2e-51 ABERRANT PEROXISOME MORPHOLOGY 2, peroxin 13 (.1) Potri.017G018400 [exp] 142 / 2e-40 AT3G07560 149 / 9e-43 ABERRANT PEROXISOME MORPHOLOGY 2, peroxin 13 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012306 pacid=23176810 polypeptide=Lus10012306 locus=Lus10012306.g ID=Lus10012306.BGIv1.0 annot-version=v1.0 ATGGCCGCCAATTCTCAGCCTTCAGGAGGTGGCGCTCCTCCTAAACCTTGGGAACGTGCGGGGGCATCATCCTCCGGCCCAGCACCATTTAAACCTCCGT CAGATGGGAGCACCAGTGCCGTGGTTGAAGCATCTGGAACCGCTCAACCAGGTGAGATCGTTCCGGCTGGTAATAACACGAATATGAACGCTCTCTCAAG GCCTGTGCCGAATCGGCCATGGCAGCCACAGACGAATCAGTATGGAGGAGGATATGGCTCTACTGGCACATACGGATATGGTGGGATGGGTGGAATGGGT GGAATGGGAGGATACAGTAGTGGTTTGTATGGGAACAGCATGTATAGAGGGGGCTATGGTGGAGGTCTATATGGAGGTGGAATGAACAGTAGTAGTTATG GTGGTCTTTATGGCGGTGGAATGAATGCTGGTGGCTATGGAGGCTATGGTAACACAATGGGTGGGTACGGAATGGGTGGAATGGGTGGAATGGGTGGTTA TGGTCCTCCGAATCCGGATGATGTTCCTACTCCTCCGAGCGTCTGGATCTCTTTCCTCCAAGCGATGGGAGGCATTGTTCAGTTCTTTGGACGGGTAGCA ATGCTAATAGACCAGAATACTCAGTCTTTCCACATGTTCATGACTGCGCTTCTTCAGTTTTTCGATCATTCAGGGATGTTATACGGCGAGTTGGCCAGAT TTGTTCTGAGAGTGCTGGGAGTCAGAACAAAGCCCAAGAAGTTGCAAGGACAAGTACCCGAAGGACATCATCCATCTCCACAAAACCCCCGTAGTTACCA GAACCAAATTCAGGGCCCAAAGGCCGCAGGGGGGCCTGGATGGGACAATGTTTGGGGAGCCGACAGCTAA
AA sequence Show only first row Show all	>Lus10012306 pacid=23176810 polypeptide=Lus10012306 locus=Lus10012306.g ID=Lus10012306.BGIv1.0 annot-version=v1.0 MAANSQPSGGGAPPKPWERAGASSSGPAPFKPPSDGSTSAVVEASGTAQPGEIVPAGNNTNMNALSRPVPNRPWQPQTNQYGGGYGSTGTYGYGGMGGMG GMGGYSSGLYGNSMYRGGYGGGLYGGGMNSSSYGGLYGGGMNAGGYGGYGNTMGGYGMGGMGGMGGYGPPNPDDVPTPPSVWISFLQAMGGIVQFFGRVA MLIDQNTQSFHMFMTALLQFFDHSGMLYGELARFVLRVLGVRTKPKKLQGQVPEGHHPSPQNPRSYQNQIQGPKAAGGPGWDNVWGADS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	0	1
AT1G54100		ALDH7B4	aldehyde dehydrogenase 7B4 (.1...		Lus10013155 [exp]	1.0	0.9606
AT1G02305			Cysteine proteinases superfami...		Lus10007212 [exp]	2.0	0.9566
AT3G18620			DHHC-type zinc finger family p...		Lus10013426 [exp]	3.2	0.9516
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10004517 [exp]	3.5	0.9546
AT5G47720			Thiolase family protein (.1.2....		Lus10038749 [exp]	3.5	0.9533
AT5G26990			Drought-responsive family prot...		Lus10031467 [exp]	3.6	0.9441
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10022726 [exp]	4.2	0.9480
AT1G12440			A20/AN1-like zinc finger famil...		Lus10028903 [exp]	5.7	0.9389
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	6.0	0.9448
AT1G61620			phosphoinositide binding (.1)		Lus10018409 [exp]	6.3	0.9375

Compare expression of checked genes

Lus10012306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.