Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04350 1023 / 0 LACS8 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) AT1G77590 910 / 0 LACS9 long chain acyl-CoA synthetase 9 (.1) AT5G27600 343 / 1e-107 LACS7, ATLACS7 long-chain acyl-CoA synthetase 7 (.1) AT3G05970 339 / 5e-106 LACS6, ATLACS6 long-chain acyl-CoA synthetase 6 (.1) AT4G23850 300 / 9e-92 LACS4 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) AT1G49430 297 / 2e-90 LRD2, LACS2 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) AT2G47240 295 / 9e-90 CER8, LACS1 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2) AT4G11030 294 / 3e-89 AMP-dependent synthetase and ligase family protein (.1) AT1G64400 290 / 7e-88 LACS3 long-chain acyl-CoA synthetase 3, AMP-dependent synthetase and ligase family protein (.1) AT3G23790 147 / 7e-37 AAE16 acyl activating enzyme 16, AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016083 [exp] 1372 / 0 AT2G04350 1057 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10018178 [exp] 889 / 0 AT1G77590 1076 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10025657 [exp] 883 / 0 AT1G77590 1067 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10029669 [exp] 864 / 0 AT1G77590 1091 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10042707 [exp] 860 / 0 AT1G77590 1082 / 0.0 long chain acyl-CoA synthetase 9 (.1) Lus10016085 [exp] 656 / 0 AT2G04350 548 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10029918 [exp] 343 / 1e-107 AT5G27600 1122 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10004483 [exp] 341 / 1e-106 AT5G27600 1121 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Lus10010530 [exp] 327 / 1e-101 AT5G27600 1095 / 0.0 long-chain acyl-CoA synthetase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169400 [exp] 1096 / 0 AT2G04350 1051 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.002G084100 [exp] 901 / 0 AT1G77590 1079 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.014G169600 [exp] 885 / 0 AT2G04350 866 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Potri.005G177500 [exp] 870 / 0 AT1G77590 1058 / 0.0 long chain acyl-CoA synthetase 9 (.1) Potri.013G021300 [exp] 338 / 1e-105 AT5G27600 1156 / 0.0 long-chain acyl-CoA synthetase 7 (.1) Potri.010G090200 [exp] 335 / 2e-104 AT3G05970 1078 / 0.0 long-chain acyl-CoA synthetase 6 (.1) Potri.001G091900 [exp] 320 / 4e-99 AT4G23850 1101 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.003G139700 [exp] 315 / 2e-97 AT4G23850 1094 / 0.0 long-chain acyl-CoA synthetase 4, AMP-dependent synthetase and ligase family protein (.1) Potri.009G109900 [exp] 308 / 7e-95 AT1G49430 951 / 0.0 LATERAL ROOT DEVELOPMENT 2, long-chain acyl-CoA synthetase 2 (.1) Potri.002G192400 [exp] 281 / 1e-84 AT2G47240 950 / 0.0 LONG-CHAIN ACYL-COA SYNTHASE 1, ECERIFERUM 8, AMP-dependent synthetase and ligase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10012307 pacid=23176750 polypeptide=Lus10012307 locus=Lus10012307.g ID=Lus10012307.BGIv1.0 annot-version=v1.0 ATGGCAGATCCGGAGGGGATTCTCTTGACCACCCCGGTTGTGGATAAACTTAGCCCTGATGATAACTTACCAACGGGGAATGCTTCTTACTATGGAGCAT ATGGCATTATTGGGGCAGCTTTGCTTGCCATACTCATACCTTGCCTACTATCTTTTCTGGTCATGGGGAAGAAAAAGCCTAAACAAAGAGGAATTCCCGT CGAGGTTGGAGGCGAGGCCGGTTATGCAATCCGGAACGCTCGAGTTCCAGAGCTGATCGAGTCTCCTTGGGAAGGAGCAACCACTATGGCTGCTCTGTTT GAGCAGTCCTGTAAGAAGTTTTCACAACAGAGGTGCCTTGGGAAGAGGAAGTTGGTTGATAAGGAATTTGTCACAGCTAGTGATGGAAGGACGTTTGAGA AGCTACATTTGGGGGATTATGAGTGGGATACTTATGGACAGGTTTTCGATCTTGCTTCTAACTTCGCGTCTGGACTCGTCAGACTAGGACATGCTCGAGG AAGCCGCGCTGCGATATTCGCTGATACTCGAGCAGAATGGTACATTGCCTTTCAGGGATGCTTTAGGCAAAATATAACTGTAGTGACTATATATGCTTCG CTAGGGGAAGATGCCCTAATTCATTCACTCAATGAGACTGAGGTATCGACTGTTATATGCGACCCCAAGCAACTGAAGAAGCTGGCTGCAGTAAGTTCAA GACTGAATACAATCAGGAATGTCATCTACTTTGAAGATGATGGTACTGCTGCAAACACTATCGATGTGGACAACTGGAAAGTTTCCTCCTTTTCAGAAGT CGAAAACCTGGGCAAAGCTAATCCAGTTTCTCCAATCTTGCCTTCTAAAGATACTACTGCTGTTGTCATGTACACAAGTGGCAGCACCGGTCTACCAAAG GGAGTGATGATCACTCACGGCAATATTGTATCCACCGTGGCAGCAGTTATGACAGTGATCCCGAATCTCGGTAGCAACGATGTCTATCTAGCGTATCTGC CCCTTGCTCATGTTCTTGAACTGGCAGCAGAGTCTTTAATGGTAGCTTCGGGTATCGGGATCGGATATGGCTCAGCATTGACCTTAACAGACACATCAAA TAAAATCAAGAAAGGAACTTCAGGGGATGTTACTGCACTGAAGCCAACCCTCATGGTAGCAGTTCCTGCTATATTAGATCGTATCCGAGAAGGAGTGCTG AAAAAGGTTGAAGGGAAAGGAGGCTTGGTAAAGAAGCTATTCGACATTGGATATAAGCGACGGCTAGCTGCAATAGAAGGAAGCTGGTTTGGTGCTTGGG GATTGGAGAAGACGTTCTGGGAAGCTGTTGTGTTCAAACCGATACAAGCTTCACTCGGAGGGCGTCTTAGATTCATGTTATGTGGTGGAGCTCCTTTATC TGCAGATTCACAGAGATTCATCAATATATGCATAGGGGCTCCTATAGGTCAAGCATATGGGTTGACCGAGACGTCTGCTGGAGCTGCATTTTCCGAGTGG GATGATACTTCAGTAGGCCGTGTTGGACCACCTCTTCCTTGTGCCTACATCAAGCTTGTTTCTTGGGGAGAAGGGGGCTATACTGTAGAAGACAAGCCGA TGCCGAGAGGAGAGATAGTAGTAGGGGGATTAAGTGTAACAGCTGGTTACTTCAACAACAAGGAAAAGACTGATGAGGTGTACAAGACCGACGAAAGAGG CTTTCGCTGGTTTTACACGGGCGACATTGGACAATTCCACCCGGATGGATGCCTTGAGATCATAGATAGGAGGAAGGATATTGTCAAGCTTCAACATGGA GAATACATCTCCCTTGGAAAGGTTGAAGCAGCTCTACTGACGAGCAACTATGTTGACAGCATCATGATATATGCAGACCCTCTGCAGAGTTATTGCGTAG CTCTTGTTGTTCCGTCTCGACAAGTACTCGAAAAATGGGCGCAAGAAGCCGGAATCGATTATCAGGACATGACCGAATTGTGTGACAAAGATGAAGCTGT TAATGAAGTTCAGATGCAACTTTCCAAGGTGGCGAAAGCTGCGAACTTGGACAAGTTCGAAACTCCGGCAAAGGTTAAGTTGCTTCCTGATCCATGGACA CCCGAGTCTGGCTTAGTGACGGCAGCCCTCAAGATAAGGAGGGAGCAGCTCAAGTCCAAGTTCAAAGATGAACTGCAGAAGCTCTATCATTGA
AA sequence Show only first row Show all	>Lus10012307 pacid=23176750 polypeptide=Lus10012307 locus=Lus10012307.g ID=Lus10012307.BGIv1.0 annot-version=v1.0 MADPEGILLTTPVVDKLSPDDNLPTGNASYYGAYGIIGAALLAILIPCLLSFLVMGKKKPKQRGIPVEVGGEAGYAIRNARVPELIESPWEGATTMAALF EQSCKKFSQQRCLGKRKLVDKEFVTASDGRTFEKLHLGDYEWDTYGQVFDLASNFASGLVRLGHARGSRAAIFADTRAEWYIAFQGCFRQNITVVTIYAS LGEDALIHSLNETEVSTVICDPKQLKKLAAVSSRLNTIRNVIYFEDDGTAANTIDVDNWKVSSFSEVENLGKANPVSPILPSKDTTAVVMYTSGSTGLPK GVMITHGNIVSTVAAVMTVIPNLGSNDVYLAYLPLAHVLELAAESLMVASGIGIGYGSALTLTDTSNKIKKGTSGDVTALKPTLMVAVPAILDRIREGVL KKVEGKGGLVKKLFDIGYKRRLAAIEGSWFGAWGLEKTFWEAVVFKPIQASLGGRLRFMLCGGAPLSADSQRFINICIGAPIGQAYGLTETSAGAAFSEW DDTSVGRVGPPLPCAYIKLVSWGEGGYTVEDKPMPRGEIVVGGLSVTAGYFNNKEKTDEVYKTDERGFRWFYTGDIGQFHPDGCLEIIDRRKDIVKLQHG EYISLGKVEAALLTSNYVDSIMIYADPLQSYCVALVVPSRQVLEKWAQEAGIDYQDMTELCDKDEAVNEVQMQLSKVAKAANLDKFETPAKVKLLPDPWT PESGLVTAALKIRREQLKSKFKDELQKLYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Lus10012307 [exp]	0	1
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10009473 [exp]	10.7	0.8763
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10020437 [exp]	14.6	0.8637
AT1G78780			pathogenesis-related family pr...		Lus10042792 [exp]	19.8	0.8621
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10036153 [exp]	20.5	0.7917
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10014831 [exp]	28.7	0.8485
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001274 [exp]	28.9	0.8310
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023433 [exp]	35.5	0.8245
AT4G15550		IAGLU	indole-3-acetate beta-D-glucos...		Lus10015515 [exp]	37.6	0.8303
AT1G65820			microsomal glutathione s-trans...		Lus10020793 [exp]	40.0	0.8286
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	40.4	0.8306

Compare expression of checked genes

Lus10012307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.