Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04360 321 / 2e-109 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016086 [exp] 562 / 0 AT2G04360 340 / 5e-117 unknown protein Lus10016084 [exp] 562 / 0 AT2G04360 340 / 5e-117 unknown protein Lus10000124 [exp] 508 / 0 AT2G04360 296 / 4e-100 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169200 [exp] 362 / 2e-125 AT2G04360 352 / 1e-121 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012308 pacid=23176769 polypeptide=Lus10012308 locus=Lus10012308.g ID=Lus10012308.BGIv1.0 annot-version=v1.0 ATGCTGGCCATTTCCAACCTCATTTCTTGCAACTTCTCTTATTCACTTAATCCCAGAATCACCAGACCTGGAATCAGCAGCTTATCCTCCCGCCAAACCC AATTCCTCAAGTCAAATTTCCCACCTTTACTTCACAGAACAGATCTAAACTCCCCTATCTTCCTTAAACCCATCGCACATATCCCAATCCAGAACAACGG TGCTCTTCAAATACGCTGTAGTGTTCTCAAGTCGCAGGATGATTCAGAAAAGAAGCCTGGTCCAGACAATGAGAATCGAGAGGGTGAAAGCAGGGATTGG ACTACTTCAATCTTACTGTTTGTGTTCTGGGGTGGAATCTTGTTCTATGCCTTCAATCTCACTCCTAACCAGACTCCGTCGAGGGACATGTATTTCTTGC AAAAGCTGTTGTTTTTTAAGGGAGATGATGGGTTTAGGATGAATGAGGTCCTTGTTTCGTTGTGGTACATTATGGGTTTGTGGCCTTTAGCATATTCCAT GCTTCTGCTTCCAACTGGTAGAAGCTCAAAGAGTAGTATCCCAGTTTGGCCTTTCCTTGTACTCTCTTGCTTTGGTGGTGCTTATGCTCTTCTGCCCTAT TTCGTCCTATGGAACCCTCCTCCACCTCCTGTTGATGAAAGTGAACTCAAGAAGTGGCCACTCAATGTCATGGATTCCAAGTTGACTGCTATTGCCTTGC TTGCTGCAGGATTAGGTCTCTTCATTCGTGCAGGAATATCGGTAGGAGACTGGAGTGAATTCTTCCAGTACTTCAGGGAGAGCAAATTTATTCACGTCAC GTCTCTCGACTTCTCTTTGCTATCCTTGTTCGCTCCTTTCTGGGTTTACAACGACATGAGTGCTAGGAAATGGTTCGACAAAGGTGCTTGGCTCCTTCCC ATATCACTGGTTCCATTCTTGGGTCCAGCTTTGTATCTTGTCCTGCGGCCATCGTTATCAGAACTTGCAGATTCATCAGAGCTGGAGTAG
AA sequence Show only first row Show all	>Lus10012308 pacid=23176769 polypeptide=Lus10012308 locus=Lus10012308.g ID=Lus10012308.BGIv1.0 annot-version=v1.0 MLAISNLISCNFSYSLNPRITRPGISSLSSRQTQFLKSNFPPLLHRTDLNSPIFLKPIAHIPIQNNGALQIRCSVLKSQDDSEKKPGPDNENREGESRDW TTSILLFVFWGGILFYAFNLTPNQTPSRDMYFLQKLLFFKGDDGFRMNEVLVSLWYIMGLWPLAYSMLLLPTGRSSKSSIPVWPFLVLSCFGGAYALLPY FVLWNPPPPPVDESELKKWPLNVMDSKLTAIALLAAGLGLFIRAGISVGDWSEFFQYFRESKFIHVTSLDFSLLSLFAPFWVYNDMSARKWFDKGAWLLP ISLVPFLGPALYLVLRPSLSELADSSELE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04360			unknown protein		Lus10012308 [exp]	0	1
AT1G12800			Nucleic acid-binding, OB-fold-...		Lus10000288 [exp]	2.4	0.9409
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10005013 [exp]	3.2	0.9413
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043145 [exp]	4.9	0.9397
AT2G04360			unknown protein		Lus10016086 [exp]	6.0	0.9254
AT2G21385			unknown protein		Lus10017494 [exp]	7.1	0.9413
AT1G62780			unknown protein		Lus10032229 [exp]	10.4	0.9328
AT1G08540		ATSIG1, SIG1, S...	SIGMA FACTOR B, RNA POLYMERASE...		Lus10020325 [exp]	10.5	0.9354
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Lus10029444 [exp]	10.8	0.9287
AT5G55580			Mitochondrial transcription te...		Lus10003775 [exp]	11.7	0.9301
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Lus10028726 [exp]	12.4	0.9278

Compare expression of checked genes

Lus10012308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.