Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07670 739 / 0 Rubisco methyltransferase family protein (.1) AT1G14030 112 / 1e-26 Rubisco methyltransferase family protein (.1) AT5G14260 111 / 4e-26 Rubisco methyltransferase family protein (.1.2.3) AT3G55080 89 / 1e-18 SET domain-containing protein (.1.2) AT2G18850 82 / 2e-16 SET domain-containing protein (.1.2) AT5G17240 61 / 7e-10 SDG40 SET domain group 40 (.1) AT3G56570 49 / 9e-06 SET domain-containing protein (.1) AT1G24610 45 / 8e-05 Rubisco methyltransferase family protein (.1) AT4G20130 44 / 0.0002 PTAC14 plastid transcriptionally active 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016087 [exp] 797 / 0 AT3G07670 657 / 0.0 Rubisco methyltransferase family protein (.1) Lus10016085 [exp] 297 / 5e-95 AT2G04350 548 / 0.0 long-chain acyl-CoA synthetase 8, AMP-dependent synthetase and ligase family protein (.1.2) Lus10036780 [exp] 114 / 4e-27 AT1G14030 643 / 0.0 Rubisco methyltransferase family protein (.1) Lus10022333 [exp] 99 / 1e-21 AT5G14260 753 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10041585 [exp] 93 / 8e-20 AT5G14260 765 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Lus10040345 [exp] 86 / 9e-18 AT3G55080 456 / 9e-158 SET domain-containing protein (.1.2) Lus10006953 [exp] 83 / 1e-16 AT2G18850 548 / 0.0 SET domain-containing protein (.1.2) Lus10025463 [exp] 80 / 1e-15 AT2G18850 525 / 0.0 SET domain-containing protein (.1.2) Lus10013825 [exp] 62 / 3e-10 AT3G56570 439 / 9e-152 SET domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169300 [exp] 826 / 0 AT3G07670 754 / 0.0 Rubisco methyltransferase family protein (.1) Potri.008G090500 [exp] 109 / 2e-25 AT1G14030 630 / 0.0 Rubisco methyltransferase family protein (.1) Potri.017G066500 [exp] 100 / 2e-22 AT5G14260 783 / 0.0 Rubisco methyltransferase family protein (.1.2.3) Potri.008G047400 [exp] 95 / 1e-20 AT3G55080 511 / 1e-179 SET domain-containing protein (.1.2) Potri.006G168900 [exp] 89 / 9e-19 AT2G18850 628 / 0.0 SET domain-containing protein (.1.2) Potri.008G134200 [exp] 69 / 3e-12 AT1G24610 639 / 0.0 Rubisco methyltransferase family protein (.1) Potri.004G081400 [exp] 65 / 5e-11 AT5G17240 543 / 0.0 SET domain group 40 (.1) Potri.014G077700 [exp] 47 / 3e-05 AT1G01920 729 / 0.0 SET domain-containing protein (.1.2) Potri.004G135700 [exp] 45 / 8e-05 AT3G56570 446 / 9e-153 SET domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09273 [flax] [poplar] Rubis-subs-bind Rubisco LSMT substrate-binding PF00856 [flax] [poplar] SET SET domain
Representative CDS sequence Show only first row Show all	>Lus10012309 pacid=23176766 polypeptide=Lus10012309 locus=Lus10012309.g ID=Lus10012309.BGIv1.0 annot-version=v1.0 ATGGCCGAAGCGTCGAGGTTGTTCCAGACGACCTTCCTCCCTTCATTCCATCCATTGCACAGAACCCACAAGCTCAACTCCTCTTCATTTATCACCCCAA CTACTTCCCCCCTCCACAGAAAGTTGAAAACTTTACACTGCTCATCATCGCTTGAAAGCGCGATCAGAGCAACAACAACAACGGCGACCCAGGAAGTAGT ACCGTGGGGATGTGACATCGACTCACCTGAAAACGCCAAAGCCCTGCAGAAGTGGTTGTCGGACAGCGGATTGCCGCCGCAGAAGATGGGGATTGAGAAA GTGGAAGTTGGCGAAAGGGGTTTGGTTGCTCTCAACAACATTAGGAAAGGGGAGAAGTTGCTCTTCGTCCCTCCTTCCCTCTTCATTACGGCCGATTCGG AATGGAGCTGCCCGGAGGTGGGTCAGGTGTTGAAGAAGTACTCAGTGCCTGACTGGCCGCTGATTGCAACTTACCTGATCAGCGAGGCAAGTCTGGAGAA ATCATCCAGATGGAGCAACTACATTTCTGCTTTACCCCGCCAACCTTATTCACTTTTGTACTGGACACGTGCTGAACTAGATAGGTATCTTGAAGCTTCA CAGATCAGTGACCGGGCTATTGAAAGGATTAACAACGTCGTTGGAACGTATAATGATTTGAAGCAGAGAATATTCTCCAAGCATCCTCAGCTCTTTCCAG AAGAGGTATTCAACATCGAGTCTTTCAGATGGTCATTCGGCATTCTCTTCTCTCGCTTGGTTCGTTTGCCTTCTATGGATGGAAAAGTAGCCCTGGTTCC CTGGGCAGATATGTTGAATCATAGTTGTGAGGTAGAGACATTTCTGGATTACGATAAATCCTCAAAAGGAGTAGTCTTCACGACTGATAGACCGTACCAG CTAGGTGAGCAGGTCTTCATATCTTATGGGAAGAAATCTAACGGAGAGCTGTTGCTATCTTATGGGTTCGTTCCAAGAGAGGGTACGAATCCCAGTGACT CGGTAGAGTTGTCATTTTCTCTTAAAAAGTCTGACAAATGCTACAAGGAGAAGCTTGAAGCTTTGAGGAAGTATGGTTTGTCAGGGTCAGAGTGCTTCCC AATCCGCGTCACCGGTTGGCCGTTGGAGTTGCTTGCATATGCCTACTTAGCCGTTAGTCCTCCTAGCATGAGCAGACAGTTTGAAGAGATGGCAGCCGCG GCATCAAATAAGAAATCAATCAAGAAAGACAGACCGTATCCTGAAATCGAGGAAGAGGCATTCCAGTTCATATTGGATAGCTGTGAGTCCAGCATATCAA AGTACACCAAGTTCTTGCAGGCAAGTGGATCAATGGATTTGGATGTGACATCTCCAAAGCAACTCAACAGAAGGTTGTTCCTGAAGCAACTTGCAGTGGA TTTGTGCAATAGCGAGCGGAGGATACTGTATCGTGCTCAAACGGTGCTGAGAAGAAGACTAAGAGACATGCGCAGTGGGGAGTTGAAAGCTTTGAATCTC TTCGATGGCCTCAGAAACCTTTTCAGATGA
AA sequence Show only first row Show all	>Lus10012309 pacid=23176766 polypeptide=Lus10012309 locus=Lus10012309.g ID=Lus10012309.BGIv1.0 annot-version=v1.0 MAEASRLFQTTFLPSFHPLHRTHKLNSSSFITPTTSPLHRKLKTLHCSSSLESAIRATTTTATQEVVPWGCDIDSPENAKALQKWLSDSGLPPQKMGIEK VEVGERGLVALNNIRKGEKLLFVPPSLFITADSEWSCPEVGQVLKKYSVPDWPLIATYLISEASLEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEAS QISDRAIERINNVVGTYNDLKQRIFSKHPQLFPEEVFNIESFRWSFGILFSRLVRLPSMDGKVALVPWADMLNHSCEVETFLDYDKSSKGVVFTTDRPYQ LGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELSFSLKKSDKCYKEKLEALRKYGLSGSECFPIRVTGWPLELLAYAYLAVSPPSMSRQFEEMAAA ASNKKSIKKDRPYPEIEEEAFQFILDSCESSISKYTKFLQASGSMDLDVTSPKQLNRRLFLKQLAVDLCNSERRILYRAQTVLRRRLRDMRSGELKALNL FDGLRNLFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07670			Rubisco methyltransferase fami...		Lus10012309 [exp]	0	1
AT5G23520			smr (Small MutS Related) domai...		Lus10019219 [exp]	1.4	0.8559
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10014067 [exp]	2.2	0.8759
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Lus10036245 [exp]	2.4	0.8528
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Lus10019849 [exp]	5.7	0.8506
AT5G62650			Tic22-like family protein (.1)		Lus10039294 [exp]	6.9	0.8461
AT1G12350		ATCOAB	4-phospho-panto-thenoylcystein...		Lus10016172 [exp]	8.2	0.7747
AT2G45270		GCP1	glycoprotease 1 (.1)		Lus10000791 [exp]	8.4	0.8474
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10005908 [exp]	9.5	0.8426
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Lus10026573 [exp]	13.7	0.8249
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10003676 [exp]	15.7	0.7739

Compare expression of checked genes

Lus10012309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.