Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04400 514 / 0 Aldolase-type TIM barrel family protein (.1) AT5G48220 479 / 2e-169 Aldolase-type TIM barrel family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006354 [exp] 752 / 0 AT2G04400 540 / 0.0 Aldolase-type TIM barrel family protein (.1) Lus10001179 [exp] 557 / 0 AT5G48220 534 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3) Lus10001753 [exp] 111 / 6e-27 AT4G31990 540 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G169100 [exp] 533 / 0 AT5G48220 516 / 0.0 Aldolase-type TIM barrel family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00218 [flax] [poplar] IGPS Indole-3-glycerol phosphate synthase
Representative CDS sequence Show only first row Show all	>Lus10012310 pacid=23176785 polypeptide=Lus10012310 locus=Lus10012310.g ID=Lus10012310.BGIv1.0 annot-version=v1.0 ATGATGGAGGGTTTAGTGTCATTGAAATCCCCTTCCGGTGTCTCCTCTCCTACCGCCGCCGCTTCTATTCGGCGTCGACCCAGCTTCTCAATCACCCGGT CCTTGGTTAATCTCCGAAAGGGTAAAAGCTTCTCCAGCGTCACCTCAATTCGAGCTCAACAACTTGAAGCAATGGATGTCGTTACCAAAGCCAGCATTCC CAAAGAAGAGTTAGAGAGTGTTCTTAAAGCCAAGGAATGGGAAGTGGGAATGCTTCAAGACGAATTGGCTGCTAGTCAAGGGATTCGAATCAGGAGGCGA CCGCCAACTAGCCCGCCACTGCACTACATTGGACCCTTTGAATTCACCGTTCAAAGTGAAGGCGATGATGCTAGTCCAAGGAACATCCTAGAGGAGATTG TATGGTACAAGGACACTGAAGTTTCCCAAATGAAAGCGATGATGCCCTTCTCTACGCTGAAGAAAGCTCTGGAGGATGCTCGTCCGACCCGAGATTTCGT TGGGGCGTTAAAAGAAGCAAATCTTCGAACTGGGTTTCCTGGTTTGATTGCGGAAGTGAAGAAGGCTTCTCCTAGCAGAGGGGTCCTCAGAGAGAATTTC GACCCTGTGGAAGTTGCTCAATCTTATGAGAAAGGTGGAGCTGCATGTCTCAGTGTCTTGACAGACGTAAAGTTCTTTCAGGGGGGTTTCATAAACTTGG AGGCAATAAGGAAAGCTGGAGTTAAGTGCCCGCTACTGTGCAAAGAATTTATTGTAGACGTGTGGCAGATCTATTATGCGAGACTCAAAGGAGCAGATGC AGTTCTTCTAATAGCTGCAGTTTTGTCTGACCTTGACATCAAATACATGATTAAGATCTGCAAGATGCTTGGTTTGGCAGCACTTGTCGAGGTGCATGAT GAGAGGGAAATGGATCGTGTTCTTGGAATAGATGGCATCGAACTTATTGGCATTAACAACCGTAGTCTTGAAACATTTGAGGTTGATATCAGTAACACGA AGAAGCTACTCGAAGGAGATTGTGGTAAACTCATCCGTGACAAAGGCATAATTGTAGTGGGCGAATCTGGGCTGTTCACTCCTGAACACATTGCCTATGT GCAAGAAGCTGGCGTTGGAGCGGTTTTGGTTGGGGAATCGCTGGTGAAACAAGGGGATCCGGGACAAGGAATCTCTGGTCTCTTTGGCAGAGACATGTCT GCATAA
AA sequence Show only first row Show all	>Lus10012310 pacid=23176785 polypeptide=Lus10012310 locus=Lus10012310.g ID=Lus10012310.BGIv1.0 annot-version=v1.0 MMEGLVSLKSPSGVSSPTAAASIRRRPSFSITRSLVNLRKGKSFSSVTSIRAQQLEAMDVVTKASIPKEELESVLKAKEWEVGMLQDELAASQGIRIRRR PPTSPPLHYIGPFEFTVQSEGDDASPRNILEEIVWYKDTEVSQMKAMMPFSTLKKALEDARPTRDFVGALKEANLRTGFPGLIAEVKKASPSRGVLRENF DPVEVAQSYEKGGAACLSVLTDVKFFQGGFINLEAIRKAGVKCPLLCKEFIVDVWQIYYARLKGADAVLLIAAVLSDLDIKYMIKICKMLGLAALVEVHD EREMDRVLGIDGIELIGINNRSLETFEVDISNTKKLLEGDCGKLIRDKGIIVVGESGLFTPEHIAYVQEAGVGAVLVGESLVKQGDPGQGISGLFGRDMS A

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04400			Aldolase-type TIM barrel famil...		Lus10012310 [exp]	0	1
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10032212 [exp]	1.4	0.9680
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028242 [exp]	3.0	0.9640
AT3G04600			Nucleotidylyl transferase supe...		Lus10026754 [exp]	3.7	0.9594
AT5G55410			Bifunctional inhibitor/lipid-t...		Lus10032575 [exp]	5.5	0.9657
AT2G04400			Aldolase-type TIM barrel famil...		Lus10006354 [exp]	6.6	0.9615
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10025866 [exp]	7.3	0.9548
AT3G59820			LETM1-like protein (.1.2)		Lus10025602 [exp]	8.2	0.9404
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10038233 [exp]	10.1	0.9595
AT4G11120			translation elongation factor ...		Lus10016073 [exp]	12.7	0.9456
AT2G35040			AICARFT/IMPCHase bienzyme fami...		Lus10013871 [exp]	13.0	0.9519

Compare expression of checked genes

Lus10012310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.