Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16740 363 / 3e-118 ATTPS03 terpene synthase 03 (.1.2) AT2G24210 359 / 2e-116 AtTPS10 terpene synthase 10 (.1) AT3G25810 355 / 2e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25830 352 / 1e-113 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 352 / 1e-113 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT4G16730 348 / 5e-113 AtTPS02 terpene synthase 02 (.1) AT1G61680 263 / 4e-80 ATTPS14 terpene synthase 14 (.1.2) AT1G70080 254 / 4e-76 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G33750 238 / 4e-70 AtTPS22 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G23960 232 / 2e-68 ATTPS21 terpene synthase 21 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006356 [exp] 984 / 0 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10006355 [exp] 934 / 0 AT2G24210 361 / 7e-117 terpene synthase 10 (.1) Lus10033643 [exp] 459 / 1e-154 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10038179 [exp] 438 / 7e-147 AT3G25810 351 / 2e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10025922 [exp] 433 / 7e-145 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10001110 [exp] 414 / 4e-138 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10018501 [exp] 369 / 8e-120 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2) Lus10018500 [exp] 364 / 2e-118 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2) Lus10039713 [exp] 358 / 2e-115 AT4G16740 409 / 4e-136 terpene synthase 03 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G041700 [exp] 411 / 2e-136 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.019G023008 [exp] 400 / 5e-133 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023006 [exp] 401 / 1e-132 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.007G118600 [exp] 400 / 2e-132 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.007G119700 [exp] 388 / 9e-127 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.019G022338 [exp] 379 / 3e-124 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 377 / 2e-123 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.001G308300 [exp] 377 / 3e-123 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023020 [exp] 328 / 2e-107 AT3G25830 440 / 1e-151 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.011G031800 [exp] 333 / 1e-106 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10012312 pacid=23176765 polypeptide=Lus10012312 locus=Lus10012312.g ID=Lus10012312.BGIv1.0 annot-version=v1.0 ATGGAAAAGATAATTAGCATGAAATTATCATCACCGCCGCTCCATTGTCACAAACTAATCAAACCCTATTATTATCCTACTCCGCCACACTTTCTTAAAA CCACCAGATTACAGCACAGCAGCTTTGGCGCCCGCCGCGGCGGCTGTCGGGAAATCCATGCAGCGGAACCAAAATCATCGACGGCTCCTCCCCAAGTTCA ACGGCGATCCGGAAACTACGGTCCAAACATCTGGGAGTCCCATCAGTGTTCCACGCCACGTCACTCGTCTTTATATGATGACTCCAACTCCATACAAGAG AGAGTGGAAGAGCTGAAGAACCACGTGAAGCACAACCTGCTGAACATTGATGACATTGTTAACGGAGACACAGGTGAGGGTCAACATATTGCAAGATTGG TGGAGACGATTGACAGAGTGCAACGGTTGGGAATCGGTTACCATTTCGAGGCGGAGATTCAGAGTGCTCTGACAAAGCTGAGCTCTATGCAGCCACCGAA AGGAAACCTACACACTTGTGCCCTTTGGTTTAGACTACTGCGACAGGCTGGAATCTGGACATCTCCAGATATATTGGAAGGATTCAAGGACGACGTTGAT GATGTGAGAGGATTGATTAGTTTGTACGAGGCTTCATATCTGGGGACACCAGGTGAAACTATTTTGGATGAGGCCAGAGACTATGCTAGGGAACATCTCC ATGATATCAAGATCAGCAGCAAGATGACGTTGATGAGTCCGAAAGTGGCCAAGCAATTGGAGAGAACATTAGAGGAGCTTCCATATCATTGGAGGACACA ACGGTCAGAGGCTAGGTGGCTCATTGAGCAATACCAACTTCATTCTGAAGAAGATGACATGGATGCAGGATTGCTTCAGTTGGCAATCTTGGACTTCAAC TTCGTCCAGCTCGTCTACCAATCCGATCTGGACGAGCTTAACCGATGGTGGAAAGAATTGGGTTTTCCAGAGAAACTGGAATTTGCAAGAGATAGGCTGA TGGAGAGTTTCCAGTGGGCAGTGGCGTTAAGCCCTGAGCCACAGTTCAGCTATTGCAGGAAGATCATGACCAAGCTCACATCTCTCATCAATGTCATCGA CGATGTCTATGATATTTATGGTTCCTTGGATGAACTCTGCCTCTTCACTGCCGCCATCCAAAGGTGGGATGCAAATGAACTAGAGATGCTTCCAAAATAC ATGCAGATATGCTTCATGGCCGTCTACAACACCACGAATGAACTTGCCTACCACACCTTAAAACAGCAGGATTTCAACTGTTTGCCTTACATTAGACAAG CATGGCAACAACAGTGTAGATTGTACCTGGAAGAAGCCAAGATGTTCCACACCGTTGGATCGCACCAAACATTTGAGGAATATTTGGAAAACGGTCAGAA CACAATAGCATCACGCATTGTGTTGATCCACACCTACGCAGCCTCTGGTGATTCTCTAACAAAGGAAACATTTGATTACTTAGCCAACTGCCCCGACCTC ACTCGTTGGATAGCCACCATTTGTCGTCTTACAAACGATCTAGCAACCTCTAAGCATGAACTAGAAAGAGGAGATATTCTCAAGTCTGTAGAGTGTTACA TGAAGGAGAAGAATGTCACGGAAAAAGAAGCGCGAGAATATATAGAATGGCGTATTGACGAAACATGGAAAAGGATTAACCGAGATGTTATATCTAACCA TGGACACCTGAAAGTGTATACAAAGCAGGTGGTGAATTTCACTCGAGCATGCCATTTCATGTACCATACTGGAGATGCCAATGGAAAGCCTACTCAAAGG CACAAAGATCGGGCCATGGCCTTGCTGTTTCAGCCATTCTCGATTCCTGCAATGGAGGGCCAAACTGGATGA
AA sequence Show only first row Show all	>Lus10012312 pacid=23176765 polypeptide=Lus10012312 locus=Lus10012312.g ID=Lus10012312.BGIv1.0 annot-version=v1.0 MEKIISMKLSSPPLHCHKLIKPYYYPTPPHFLKTTRLQHSSFGARRGGCREIHAAEPKSSTAPPQVQRRSGNYGPNIWESHQCSTPRHSSLYDDSNSIQE RVEELKNHVKHNLLNIDDIVNGDTGEGQHIARLVETIDRVQRLGIGYHFEAEIQSALTKLSSMQPPKGNLHTCALWFRLLRQAGIWTSPDILEGFKDDVD DVRGLISLYEASYLGTPGETILDEARDYAREHLHDIKISSKMTLMSPKVAKQLERTLEELPYHWRTQRSEARWLIEQYQLHSEEDDMDAGLLQLAILDFN FVQLVYQSDLDELNRWWKELGFPEKLEFARDRLMESFQWAVALSPEPQFSYCRKIMTKLTSLINVIDDVYDIYGSLDELCLFTAAIQRWDANELEMLPKY MQICFMAVYNTTNELAYHTLKQQDFNCLPYIRQAWQQQCRLYLEEAKMFHTVGSHQTFEEYLENGQNTIASRIVLIHTYAASGDSLTKETFDYLANCPDL TRWIATICRLTNDLATSKHELERGDILKSVECYMKEKNVTEKEAREYIEWRIDETWKRINRDVISNHGHLKVYTKQVVNFTRACHFMYHTGDANGKPTQR HKDRAMALLFQPFSIPAMEGQTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10012312 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016223 [exp]	3.5	0.9612
AT2G20830			transferases;folic acid bindin...		Lus10039790 [exp]	3.6	0.9548
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10006668 [exp]	3.7	0.9638
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	4.7	0.9636
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	5.5	0.9620
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	5.9	0.9600
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006835 [exp]	6.2	0.9633
AT1G70840		MLP31	MLP-like protein 31 (.1)		Lus10020497 [exp]	7.2	0.9629
					Lus10012313 [exp]	9.1	0.9349
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10032739 [exp]	10.0	0.9439

Compare expression of checked genes

Lus10012312 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.