Plant FIBer expression Database

Lus10012313 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006358
[exp]
270 / 5e-92 AT4G25330 65 / 4e-12 unknown protein
Lus10012314
[exp]
98 / 2e-24 AT4G25330 104 / 5e-26 unknown protein
Lus10006359
[exp]
55 / 1e-09 ND /
Lus10009776
[exp]
47 / 5e-07 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G216900
[exp]
92 / 3e-22 AT4G25330 87 / 9e-20 unknown protein
PFAM info
Representative CDS sequence
>Lus10012313 pacid=23176754 polypeptide=Lus10012313 locus=Lus10012313.g ID=Lus10012313.BGIv1.0 annot-version=v1.0
ATGGTAATTTTGGAGACAGAAAGTAGTGGCGACGATACCGACTTTGGAGGGCCCTATGTTATCCTGATAGACAATCTGGAGAAGGGCATCTCCCCTGCAA
CAATAGAGCAGTTTATAAAGGAACAGATATCAGTTGTGGTTGAAGCACATCCTTTGGGGAGTCTTTTTTATGGAACAGCCATAAAGGCACTCATTAGTCT
TGACTCTCAGCAGAAGTATCAGCAGCTGCCAACTTCCTACATTCTCCCGAGTCTTTGCTTTTCAGCACGGCCATTGGTGGTAACTGATAAAAGTTTTGGA
CTTGGTTCATATCTGATCCCTAGAAAATCAAAGTACACACAGGGCAAGTGGCAACACAGAAGTGATGAGAGGGAAGAAGGGCATGGACTGAAGGTAGTGA
GGAGGGGATCAGATGGATACAGAAGAGAAAAGCAGCTGAGGGAATTGGTCATGGACTTCAAAGAGCATCAGAAGCTTATGTTCGAGGCATTGTCTGGGAT
GGAGGAAGAGATCAAGCAGCGGGTTTTTTGA
AA sequence
>Lus10012313 pacid=23176754 polypeptide=Lus10012313 locus=Lus10012313.g ID=Lus10012313.BGIv1.0 annot-version=v1.0
MVILETESSGDDTDFGGPYVILIDNLEKGISPATIEQFIKEQISVVVEAHPLGSLFYGTAIKALISLDSQQKYQQLPTSYILPSLCFSARPLVVTDKSFG
LGSYLIPRKSKYTQGKWQHRSDEREEGHGLKVVRRGSDGYRREKQLRELVMDFKEHQKLMFEALSGMEEEIKQRVF

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10012313
[exp]
0 1
AT2G44840 AP2_ERF ATERF13, EREBP ethylene-responsive element bi... Lus10016223
[exp]
2.2 0.9450
AT2G44840 AP2_ERF ATERF13, EREBP ethylene-responsive element bi... Lus10029318
[exp]
3.9 0.9092
AT3G19990 unknown protein Lus10038848
[exp]
5.5 0.9268
AT4G25150 HAD superfamily, subfamily III... Lus10006849
[exp]
6.6 0.9127
AT5G01750 Protein of unknown function (D... Lus10022754
[exp]
7.9 0.8839
AT4G16740 ATTPS03 terpene synthase 03 (.1.2) Lus10012312
[exp]
9.1 0.9349
AT1G49320 ATUSPL1 unknown seed protein like 1 (.... Lus10032324
[exp]
10.8 0.8665
AT5G18670 BAM9, BMY3 BETA-AMYLASE 9, beta-amylase 3... Lus10012804
[exp]
12.0 0.8996
AT1G21890 nodulin MtN21 /EamA-like trans... Lus10021201
[exp]
18.0 0.8942
AT1G16390 3-Oct, ATOCT3 organic cation/carnitine trans... Lus10005825
[exp]
22.2 0.9075

Lus10012313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.