Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25330 83 / 3e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006359 [exp] 278 / 4e-94 ND / Lus10009776 [exp] 208 / 4e-67 ND / Lus10006358 [exp] 119 / 1e-30 AT4G25330 65 / 4e-12 unknown protein Lus10012313 [exp] 98 / 4e-24 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216900 [exp] 254 / 2e-81 AT4G25330 87 / 9e-20 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012314 pacid=23176741 polypeptide=Lus10012314 locus=Lus10012314.g ID=Lus10012314.BGIv1.0 annot-version=v1.0 ATGTCACCGCCGGCCGCCGATCCCAAGCGGCGCTCCTCATCTACGTCCAGTGGCAAACTCGAGTTCCACTCCACCTACGACGACGCGTGGCACGTCGTCC GCGCAGTTCTCAAAGGCAAGAAGCTCATCTTGAAGTACGAAAACTCCAGCAACGACCAGGACGACGTCATCGAGCTGCGGAGCTTCAGTGATCTTGAGGA ACATCGGGAATTCGAAGCTCGTTTCAGGTCCTTGTCGCGAAGGCTACGGGATTCCGAGTGTAAGAAACTCGCTGAAGGAACTGTGGTTTGCGTCTCGCAC TCGTTCCACGATCAGGACCACCGCTTCTACGACGCCGTGGTTGATCAGGTAAACCGTGAAAAGCATTCGTTCTCCAGTGGCAAAGAAGTGTGCAAGTGTA CATTTACGGTTGTTTGGCAAAGTGGACCTTGGAAAGGCTGTGTAGCGAGTAAACTTATACAGCACATTTCCATGGTTGGGTCTAATGCAGATCTTGATCC TGTAGTTCTCCAATTCTTGACTATGGCTAGTGAAGAGATCGCTGGTGCTTGTTCTGAGGAAGAAGCTAGCCAAGATGATCATCAGTCTGCTTGTGGAACG CCACAGATCGAAGAAGGGAGTAGAGAAGATGCTGATTTTGGGCGGCAAGCTGACCGTTATGCATTTCTGGTTGAAAATCTGGACAAAAACGTATCTCCTT CGGCATTGAAGGACTTCATACACCAAGAAACATCTCTCTTGGTGAGAGTTCATATCTCACCAATTCTGTATCCTGAATCATTCACCAGGGCAGTCGTTGT GGTGTGTTCAGAGAAGCAGCTAGAGGAGCTATGCAAATTTCTAGACAGTCCCAATCACATTGTTGTCTCTGAGTCAGGAAGGCCCTTGGTAATCACTGAT AAAAACTTCAACTTGGATACATTTGTGATGCCAATGGAGATCGTGAGCTACGTGCAGGGCCAGCAGGGTAGAAGTGTTGGTGCAAATTGTGGATTGAGAG TCGTCAAGGATGGATCGGTTGAATATGAAGTTGCCAAGGAGATGAAGGATTTGTTCGTGGTGTTCGCAGACCATCAAAGGCTTATGGTCCAGGATCTAGC CGCGATGGAAAAGGAGATAATGGAAAAATGA
AA sequence Show only first row Show all	>Lus10012314 pacid=23176741 polypeptide=Lus10012314 locus=Lus10012314.g ID=Lus10012314.BGIv1.0 annot-version=v1.0 MSPPAADPKRRSSSTSSGKLEFHSTYDDAWHVVRAVLKGKKLILKYENSSNDQDDVIELRSFSDLEEHREFEARFRSLSRRLRDSECKKLAEGTVVCVSH SFHDQDHRFYDAVVDQVNREKHSFSSGKEVCKCTFTVVWQSGPWKGCVASKLIQHISMVGSNADLDPVVLQFLTMASEEIAGACSEEEASQDDHQSACGT PQIEEGSREDADFGRQADRYAFLVENLDKNVSPSALKDFIHQETSLLVRVHISPILYPESFTRAVVVVCSEKQLEELCKFLDSPNHIVVSESGRPLVITD KNFNLDTFVMPMEIVSYVQGQQGRSVGANCGLRVVKDGSVEYEVAKEMKDLFVVFADHQRLMVQDLAAMEKEIMEK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25330			unknown protein		Lus10012314 [exp]	0	1
AT2G47970			Nuclear pore localisation prot...		Lus10027618 [exp]	3.6	0.7586
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003394 [exp]	4.0	0.7287
AT5G67220			FMN-linked oxidoreductases sup...		Lus10041598 [exp]	7.9	0.7037
AT5G51280			DEAD-box protein abstrakt, put...		Lus10008856 [exp]	9.2	0.7048
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10003437 [exp]	19.6	0.7058
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10039472 [exp]	20.4	0.7060
					Lus10040594 [exp]	22.4	0.6492
AT5G54540			Uncharacterised conserved prot...		Lus10003594 [exp]	23.6	0.7144
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	25.9	0.6991
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10006987 [exp]	29.4	0.6175

Compare expression of checked genes

Lus10012314 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.