Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07680 248 / 3e-84 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G22845 106 / 2e-28 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G57620 39 / 0.0009 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006360 [exp] 359 / 5e-128 AT3G07680 268 / 5e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10016624 [exp] 247 / 1e-83 AT3G07680 320 / 2e-112 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10022525 [exp] 246 / 3e-83 AT3G07680 320 / 1e-112 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10032588 [exp] 241 / 4e-81 AT3G07680 305 / 3e-106 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10036603 [exp] 238 / 3e-80 AT3G07680 259 / 9e-89 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10035821 [exp] 237 / 7e-80 AT3G07680 254 / 1e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10043160 [exp] 244 / 2e-78 AT1G55840 427 / 1e-147 Sec14p-like phosphatidylinositol transfer family protein (.1.2) Lus10041182 [exp] 107 / 1e-28 AT3G22845 350 / 2e-124 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10021900 [exp] 105 / 3e-28 AT3G22845 348 / 9e-124 emp24/gp25L/p24 family/GOLD family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G369000 [exp] 233 / 2e-78 AT3G07680 315 / 2e-110 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G081700 [exp] 103 / 4e-27 AT3G22845 366 / 1e-130 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [flax] [poplar] GOLD-like PF01105 [flax] [poplar] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Lus10012315 pacid=23176823 polypeptide=Lus10012315 locus=Lus10012315.g ID=Lus10012315.BGIv1.0 annot-version=v1.0 ATGTGGGCGTTGTTGGGGATAATAACACTACTGCTGTGTAGTAGCTTGAGAACGACGACGTCGATAAGGTTCGTGATGGACAGAGAGGAATGCTTCTCCC ACAACGCAGAGTACGAGGCCGACACCGTACATGTCTCGTTCGTTGTCATCAAGGCTGAAACTCCTTGGGAATCCATCCCTGCAACTGTCGATTTCATCAT AAAAGGGCTGAACGGGGATGTGTTCCACGAGATGTTGGGGAAGGCGGAAGTGAAGTTTGAGTTCAAAGTGCACGAGCGAGGTGTATACCGATTCTGCTTC TTCAACAAATCGCCTTTCCACGAGACTATAGATTTCGACGTCCACATTGCACACTTCACCTACCACGATGAGCACGCCACCAATGAACATTTTGGGCCAT TGATGGATCAGATAACAAAGTTGGAAGAGGCGCTCTACAACATTCAGTTTGAACAACATTGGCTCGAGTCTCAGACTGATCGTCAGGCTTTAGTGAATGA CAAGATGAGCAAGAAAGCAATGGACAAGGCAGTGATAGAGTCAGTAGCACTGGTAGGGGCTAGCCTCCTCCAAGTCTACCTTCTTCACTCCTTGTTTGAC CGCAAGCTCCCTCACTATTCCCCCAGCGTTTAA
AA sequence Show only first row Show all	>Lus10012315 pacid=23176823 polypeptide=Lus10012315 locus=Lus10012315.g ID=Lus10012315.BGIv1.0 annot-version=v1.0 MWALLGIITLLLCSSLRTTTSIRFVMDREECFSHNAEYEADTVHVSFVVIKAETPWESIPATVDFIIKGLNGDVFHEMLGKAEVKFEFKVHERGVYRFCF FNKSPFHETIDFDVHIAHFTYHDEHATNEHFGPLMDQITKLEEALYNIQFEQHWLESQTDRQALVNDKMSKKAMDKAVIESVALVGASLLQVYLLHSLFD RKLPHYSPSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10012315 [exp]	0	1

Compare expression of checked genes

Lus10012315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.