Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07700 1038 / 0 Protein kinase superfamily protein (.1.2.3) AT5G48230 685 / 0 EMB1276, ACAT2 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2) AT5G47720 657 / 0 Thiolase family protein (.1.2.3.4.5) AT5G64940 523 / 1e-171 ATATH13, ATOSA1 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) AT5G24970 257 / 1e-72 Protein kinase superfamily protein (.1.2) AT1G79600 255 / 3e-72 Protein kinase superfamily protein (.1) AT1G71810 232 / 3e-64 Protein kinase superfamily protein (.1) AT3G24190 215 / 6e-58 Protein kinase superfamily protein (.1) AT4G31390 202 / 2e-54 Protein kinase superfamily protein (.1.2) AT2G39190 201 / 3e-53 ATATH8 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006363 [exp] 1355 / 0 AT3G07700 1066 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10006362 [exp] 739 / 0 AT5G47720 652 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10038749 [exp] 636 / 0 AT5G47720 663 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10039109 [exp] 623 / 0 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5) Lus10036636 [exp] 526 / 2e-172 AT5G64940 1087 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035853 [exp] 508 / 7e-167 AT5G64940 1046 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Lus10035701 [exp] 260 / 2e-73 AT1G79600 1034 / 0.0 Protein kinase superfamily protein (.1) Lus10020103 [exp] 235 / 3e-65 AT5G24970 920 / 0.0 Protein kinase superfamily protein (.1.2) Lus10017924 [exp] 219 / 1e-59 AT1G71810 858 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G168600 [exp] 1096 / 0 AT3G07700 1038 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.014G168700 [exp] 705 / 0 AT5G48230 665 / 0.0 EMBRYO DEFECTIVE 1276, acetoacetyl-CoA thiolase 2 (.1.2) Potri.006G004400 [exp] 687 / 0 AT5G47720 653 / 0.0 Thiolase family protein (.1.2.3.4.5) Potri.005G083200 [exp] 531 / 3e-174 AT5G64940 1068 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.007G082500 [exp] 525 / 5e-172 AT5G64940 1081 / 0.0 A. THALIANA OXIDATIVE STRESS-RELATED ABC1-LIKE PROTEIN 1, ARABIDOPSIS THALIANA ABC2 HOMOLOG 13, ABC2 homolog 13 (.1.2) Potri.002G000100 [exp] 254 / 5e-72 AT1G79600 949 / 0.0 Protein kinase superfamily protein (.1) Potri.018G014000 [exp] 246 / 6e-69 AT5G24970 973 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G061000 [exp] 235 / 5e-65 AT1G71810 915 / 0.0 Protein kinase superfamily protein (.1) Potri.001G050700 [exp] 218 / 9e-59 AT3G24190 1233 / 0.0 Protein kinase superfamily protein (.1) Potri.010G221000 [exp] 204 / 3e-54 AT2G39190 965 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [flax] [poplar] Thiolase PF02803 [flax] [poplar] Thiolase_C Thiolase, C-terminal domain CL0046 [flax] [poplar] Thiolase PF00108 [flax] [poplar] Thiolase_N Thiolase, N-terminal domain CL0016 [flax] [poplar] PKinase PF03109 [flax] [poplar] ABC1 ABC1 family
Representative CDS sequence Show only first row Show all	>Lus10012317 pacid=23176792 polypeptide=Lus10012317 locus=Lus10012317.g ID=Lus10012317.BGIv1.0 annot-version=v1.0 ATGGCGGCACTACTGGCTTCACACAGCTGTTATTGCCTTCATGTGGAGTCCTTGAATCAAGGTAGAAATATCTCGGAGAGCTTCAGTTTCTCAAGCTCAG TTTCCAGCTCATCATTTGCAGTGTCTAAGAGGCAGCATGATCATACTCCGTCGAGATCTCGATTTCAAGTGCGGATGACTCAGACTGAATCATCCCCAGC ATCCAAGTTAGGCCCAAATGGACGGCCGGTTAAAATGGTGCCAGTGAATGAAGTGGTGAAGAGGAGGACGCCAAATGGTAGTAGTAGGAGTAGTAAGGTA GATTTAGTGAATGGGAAAAGGCAGGTGATTAATGGAGCTGCTAGTATAGTAAAGAAAAGTTCTTCAGTAGTTCCTGTGAGAAGATTGGCAGATAATAAAC TTCCTCCTCTTGAGGGTTTGAAAGCTCTTCCTACTGATGAAGGCTTCAGTTGGGCTGATGACAATTACAACAATGTTCAGAGGAATATTGACATCTGGTC TTTCTTCCTTGCTTTTCGGGTTCGTCTCACGTTGGATAATGCCAAATGGGCATATTTGGGGAGTTTCAGTGAAGAGAAGCAGAAATTGCGAAGGAAGAAC ACAGCTGGGTGGCTAAGGGAGCAAGTATTGCAGCTCGGTCCGACTTTTATCAAACTCGGACAGTTGTCTTCGACAAGGTCGGACCTTTTCCCCAAGGAAT TTGTTGATGAGCTTGCCAAGTTGCAGGATAGAGTCCCAGCATTCCCGCCTAGTAAAGCAAGAAGCTTCGTTGAGCGAGAACTGGGAGCTCCTATAGATGT GCTGTTCAAGGAGTTTGAAGACAGGCCGATAGCAGCAGCTAGCCTTGGTCAGGTGCATCGAGCTATCCTACACAACGGAGAGAAAGTCGTCGTCAAAATT CAGAGGCCTGGCCTCAAGAAGCTTTTTGATATTGATCTAAATAATATGAAGATAGTTGCAGGATACTTGCAGAAAAGTGACACTTTTGGTGGTCCGACTA ACGATTGGGTTGGTATATACGAGGAATGCGCCACGATTTTATACCAGGAGATTGACTACATCAATGAAGGAAAAAATGCAGATAGATTCCGTCGAGATTT CAGGAATATAAAGTGGGTCCGAGTACCTATGGTATTTTGGGACTACACATCTACAAAGGTCTTGACTTTGGAATATGTACCAGGCATTAAGATTAATGAG TTGGACATGCTAGATTCCCGGGGATACAATCGTTCTCGGGTTTCATCACGAGCCATCGAGGCATACTTGATTCAGATTCTGAAAACCGGTTTCTTCCATG CGGATCCTCATCCCGGAAATCTCGCAGTTGATATCGACGAATCTCTCATCTATTACGACTTCGGTATGATGGGAGAGATAAAGGCTTTTACTAGGGAGAG GTTGCTTGGACTTTTCTATGCAGTTTATGAGAAAGATGCCAGAAAGGTTATGGAGAGCCTGATAGACCTTGGAGCACTTCAGCCCACTGGGGACTTGTCT TCTGTGAGGAGATCCGTTCAATACTTCTTAGACAACTTGTTAGGGCAGACGCCTGATCAACAGCAGACTTTAGCAGCCATTGGGGAGGATTTGTTTTCAA TAGCTCAGGATCAACCATTTCGGTTCCCATCCACCTTTACGTTCGTTATAAGGGCGTTTTCAACCCTTGAAGGCATAGGCTACATTCTCGATCCGGACTT TTCATTCGTGAAGATCGCTGCCCCTTATGCCCAGGAGCTTTTAGATATCAGACAGAGGCAGCAGCCTGGAACACAACTAGTAGAGCAAATAAGGAAACAG GCCAACGATGCTAGAAGTTCCACAATGTCCATGCCGTATAGAGTCCAGCGGATAGAAGAGTTCGTGAAGCAACTCGAATCCGGAGACTTCAAACTCCGCG TCCGGGTACTAGAGTCGGAGAGAGCAGCAAGGAAAGCAACCATCTTACAGATGGCAACAATGTACACAGTGTTAGGAGGCACACTTGTAAACCTTGGGGT AACCTTTGGCAGTCAGGGGAGCCAACTTGTTGCCAATGGTTCATTTGTAGGCGCAGGAGTATTCTTGTTACTGTTGATAAGGTCAATGCAAAGGCATTGT ATTGTGCTGCTTCGACTTTCCCCTTCGCTGCTTCTTATCAGAGTTGCATCTAAAGTAACATCCATGGCTTCAGCTCCATCAGCTTCAGATATAAAGCCTA AAGATGTTTGCATTGTTGGAGTTGCACGAACCCCAATGGGTGGATTTCTTGGAACCTTGTCTTCTGTTCCTGCAACCAAGCTTGGATCTATAGCTATTGA AGCTGCTCTTAAGAGAGCCAATGTGGATCCATCCCTAGTACAGGAAGTTATCTTTGGTAATGTTCTGAGTGCGAATCTAGGACAGGCTCCAGCCAGGCAG GCGGCATTGGGTGCAGGAATTCCTAGCACAGTCATCTGCACAACTGTCAACAAAGTGTGTGCTTCAGGGATGAAGGCAACTATGCTTGCGGCCCAGAGTA TTCAGTTGGGCATCAACAATGTTGTTGTCGCTGGAGGCATGGAGAGCATGTCCAATGTACCTAAATATCTAGCGGAAGCAAGGAAGGGATCTCGGCTTGG ACATGATTCACTTGTTGATGGGATGCTTAAGGACGGACTATGGGATGTGTACAATGATTTTGGCATGGGAAACTGTGCTGAAATATGTGCAGAACAGCAC TCCATAACAAGGGAGCAGCAGGATGACTTTGCAGTTCAAAGTTTTGAGCGTGGCATTGCTGCACAGGACAGTGCTGCTTTTGCATGGGAAATAGTTCCGG TTGAGGTTTCTGGCGGGAGGGGAAAGCCGTCAACCCTTGTTGATAAAGATGAAGGTTTAGGGAAGTTTGATGCTGCTAAATTAAGGAAGCTCCGACCAAG TTTCAAACCAAATGGAGGAACCGTTACTGCTGGGAATGCTTCTAGCATCAGTGACGGTGCAGCTGCTCTAGTTCTGGTGAGTGGAGAGAAGGCATTAGAG CTCGGGTTACACGTGATTGCAAAGATCACTGGATATGCCGATGCTGCACAGGCACCAGAGCTTTTCACCACAGCTCCAGCTCTGGCCATACCTAAAGCTA TTTCAAACGCTGGATTGGATGCTTCCCGAGTAGATTATTACGAGATAAACGAAGCCTTCGCTGTTGTAGCCCTTGCTAATCAGAAGTTGCTGAGTCTTAA TCCGGAAAAGATTAACGTACATGGCGGAGCAGTCTCTTTGGGGCATCCACTAGGATGCAGTGGCGCTCGGATCCTGGTCACGCTTTTGGGAGTGTTGAGG CAGAAGAATGCGAAATACGGCGTGGGCGGAGTATGCAATGGGGGAGGTGGAGCATCAGCACTGGTTGTGGAGCTTCTATAA
AA sequence Show only first row Show all	>Lus10012317 pacid=23176792 polypeptide=Lus10012317 locus=Lus10012317.g ID=Lus10012317.BGIv1.0 annot-version=v1.0 MAALLASHSCYCLHVESLNQGRNISESFSFSSSVSSSSFAVSKRQHDHTPSRSRFQVRMTQTESSPASKLGPNGRPVKMVPVNEVVKRRTPNGSSRSSKV DLVNGKRQVINGAASIVKKSSSVVPVRRLADNKLPPLEGLKALPTDEGFSWADDNYNNVQRNIDIWSFFLAFRVRLTLDNAKWAYLGSFSEEKQKLRRKN TAGWLREQVLQLGPTFIKLGQLSSTRSDLFPKEFVDELAKLQDRVPAFPPSKARSFVERELGAPIDVLFKEFEDRPIAAASLGQVHRAILHNGEKVVVKI QRPGLKKLFDIDLNNMKIVAGYLQKSDTFGGPTNDWVGIYEECATILYQEIDYINEGKNADRFRRDFRNIKWVRVPMVFWDYTSTKVLTLEYVPGIKINE LDMLDSRGYNRSRVSSRAIEAYLIQILKTGFFHADPHPGNLAVDIDESLIYYDFGMMGEIKAFTRERLLGLFYAVYEKDARKVMESLIDLGALQPTGDLS SVRRSVQYFLDNLLGQTPDQQQTLAAIGEDLFSIAQDQPFRFPSTFTFVIRAFSTLEGIGYILDPDFSFVKIAAPYAQELLDIRQRQQPGTQLVEQIRKQ ANDARSSTMSMPYRVQRIEEFVKQLESGDFKLRVRVLESERAARKATILQMATMYTVLGGTLVNLGVTFGSQGSQLVANGSFVGAGVFLLLLIRSMQRHC IVLLRLSPSLLLIRVASKVTSMASAPSASDIKPKDVCIVGVARTPMGGFLGTLSSVPATKLGSIAIEAALKRANVDPSLVQEVIFGNVLSANLGQAPARQ AALGAGIPSTVICTTVNKVCASGMKATMLAAQSIQLGINNVVVAGGMESMSNVPKYLAEARKGSRLGHDSLVDGMLKDGLWDVYNDFGMGNCAEICAEQH SITREQQDDFAVQSFERGIAAQDSAAFAWEIVPVEVSGGRGKPSTLVDKDEGLGKFDAAKLRKLRPSFKPNGGTVTAGNASSISDGAAALVLVSGEKALE LGLHVIAKITGYADAAQAPELFTTAPALAIPKAISNAGLDASRVDYYEINEAFAVVALANQKLLSLNPEKINVHGGAVSLGHPLGCSGARILVTLLGVLR QKNAKYGVGGVCNGGGGASALVVELL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07700			Protein kinase superfamily pro...		Lus10012317 [exp]	0	1
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Lus10023505 [exp]	9.2	0.7074
AT2G38840			Guanylate-binding family prote...		Lus10024841 [exp]	14.1	0.6839
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Lus10003066 [exp]	15.4	0.6073
AT4G05090			Inositol monophosphatase famil...		Lus10006739 [exp]	16.9	0.6091
					Lus10032489 [exp]	20.1	0.5922
AT4G34810			SAUR-like auxin-responsive pro...		Lus10042379 [exp]	28.9	0.6661
					Lus10016100 [exp]	30.0	0.6770
AT2G35736			unknown protein		Lus10000732 [exp]	33.3	0.6326
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022215 [exp]	39.7	0.6406
AT3G26590			MATE efflux family protein (.1...		Lus10006205 [exp]	44.0	0.6365

Compare expression of checked genes

Lus10012317 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.