Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39920 281 / 7e-93 TFCC, POR TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006364 [exp] 593 / 0 AT4G39920 344 / 1e-117 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G074700 [exp] 368 / 9e-127 AT4G39920 332 / 6e-113 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1) Potri.007G093800 [exp] 194 / 2e-60 AT4G39920 166 / 9e-50 TUBULIN-FOLDING COFACTOR C, PORCINO, C-CAP/cofactor C-like domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0391 [flax] [poplar] CAP_C-like PF07986 [flax] [poplar] TBCC Tubulin binding cofactor C
Representative CDS sequence Show only first row Show all	>Lus10012318 pacid=23176791 polypeptide=Lus10012318 locus=Lus10012318.g ID=Lus10012318.BGIv1.0 annot-version=v1.0 ATGGAAGAAGAACCGCCAACGCCTGCGGCGGGGAACGCAATGCCGGCCGAGTCTGCCGACCAATCCATGGAAGAAGCAGCCTTAGCGAAGAAACGCCAAG CGATTATCGATCGACTCTCCAATCGTCATCAGTCCCGGAGCATTAGCAAGCCACTGGAGGACAACTCCGTCGCCTCCTTCTCCTCCAAATTCTCCGACTC CAAGCGATCTCTAGAGACTCTCCTTGCCAAGTCTTCTTCGCTAGCCCACGATCCGCCCGCACTCAGATCTCACCTCGACGGAATCTCATCATCCATCGCC TCGTTAGAGCAATTCGTCGCCGAGAGCTCTTACTCCCTCCCGTCGTACGAGCTTCGATCTGCTCTCAAATCGGTCGCCGAGCTCAAACTGCATCTTGAAA ATCTCACCGCCGAGCTTCTCCCGAAGAAGAAGTTCTCCTTCAGGAGCAAATCCGGCACAGGAAGCAAATTCTCAGCACCCGTTCAACCTAAGGATCCCGA GATCCCGTCGCCTTCTCCGCCGGCGGCTTTCGTGATCCGAGAATCGCCAGGGTTTCGTAACAGAGAGAAGGAGATATTGACGAAGAATTTCAAAGGCCTG GGGATCGGTGAGTTTACTGTTTCCGAATTGGATTCCTGCGAAGTGAGGTTGATTGGGTGCGTCAATGCGTTGTTCTTCAATAAATTGAAGAATTGCAAGG TTTACACTGGCCCTGTGATTGGTTCGGTCTTGATAGAAGAAGTTGAGGACTGTGTGTTTTTGCTGGCTTCGCATCAGATTAGGATACACAATGCTAAGGG TTGTGATTTCTATCTGAGAGTAAGGAGCAGGCCGATAATTGAAGATTGTTCAAAGGTGAGATTTGCTCCTTACTGTTTAAGGTATGAAGGGATTGATGAA GAGTTGAAGGAAGCAGGGCTGGAAGAGGAGAGTGGGAAATGGGCAAATGTGGATGATTTCAAGTGGCTGAAAGCCTTGCAGTCTCCGAACTGGTCTGTTA TGGAGGAGAGTCAGAGAATTGGTTGTGTTGAGATCAAGGAAAATGGCAATGGTTTCCGGCCAGAGTGA
AA sequence Show only first row Show all	>Lus10012318 pacid=23176791 polypeptide=Lus10012318 locus=Lus10012318.g ID=Lus10012318.BGIv1.0 annot-version=v1.0 MEEEPPTPAAGNAMPAESADQSMEEAALAKKRQAIIDRLSNRHQSRSISKPLEDNSVASFSSKFSDSKRSLETLLAKSSSLAHDPPALRSHLDGISSSIA SLEQFVAESSYSLPSYELRSALKSVAELKLHLENLTAELLPKKKFSFRSKSGTGSKFSAPVQPKDPEIPSPSPPAAFVIRESPGFRNREKEILTKNFKGL GIGEFTVSELDSCEVRLIGCVNALFFNKLKNCKVYTGPVIGSVLIEEVEDCVFLLASHQIRIHNAKGCDFYLRVRSRPIIEDCSKVRFAPYCLRYEGIDE ELKEAGLEEESGKWANVDDFKWLKALQSPNWSVMEESQRIGCVEIKENGNGFRPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10012318 [exp]	0	1
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10006364 [exp]	1.0	0.9246
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10032649 [exp]	4.5	0.9061
AT1G69430			unknown protein		Lus10036796 [exp]	5.7	0.8918
AT3G03570			Protein of unknown function (D...		Lus10020328 [exp]	7.4	0.8650
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10025890 [exp]	7.9	0.8139
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10011020 [exp]	9.3	0.8429
AT1G76400			Ribophorin I (.1)		Lus10016038 [exp]	10.0	0.8682
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Lus10013506 [exp]	10.1	0.8919
AT1G21370			unknown protein		Lus10029764 [exp]	10.2	0.8865
AT5G42350			Galactose oxidase/kelch repeat...		Lus10013215 [exp]	12.3	0.8716

Compare expression of checked genes

Lus10012318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.