Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47650 256 / 3e-85 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G25434 244 / 3e-80 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT4G12720 240 / 9e-79 ATNUDX7, GFG1, AtNUDT7, NUDT7 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) AT5G47240 228 / 8e-73 ATNUDT8 nudix hydrolase homolog 8 (.1) AT2G04450 223 / 3e-72 ATNUDX6, ATNUDT6 nucleoside diphosphates linked to some moiety X 6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, nudix hydrolase homolog 6 (.1) AT2G04430 214 / 2e-68 ATNUDT5 nudix hydrolase homolog 5 (.1) AT2G04440 102 / 4e-26 MutT/nudix family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006365 [exp] 486 / 5e-175 AT4G12720 300 / 1e-101 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) Lus10006366 [exp] 402 / 2e-142 AT5G47650 281 / 4e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10012320 [exp] 399 / 2e-141 AT5G47650 282 / 2e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10039079 [exp] 251 / 5e-82 AT5G47650 345 / 3e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10038780 [exp] 250 / 1e-81 AT5G47650 345 / 1e-118 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10040169 [exp] 217 / 1e-68 AT5G47240 409 / 7e-143 nudix hydrolase homolog 8 (.1) Lus10004371 [exp] 216 / 1e-65 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10004195 [exp] 45 / 4e-05 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1) Lus10029398 [exp] 44 / 6e-05 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G168400 [exp] 300 / 4e-101 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G127700 [exp] 283 / 1e-95 AT5G47650 323 / 1e-111 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G106100 [exp] 283 / 1e-95 AT5G47650 332 / 9e-115 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.005G077500 [exp] 281 / 3e-94 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G368000 [exp] 258 / 1e-85 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 257 / 1e-84 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.006G005400 [exp] 254 / 1e-83 AT5G47650 347 / 7e-120 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G154300 [exp] 215 / 7e-68 AT5G47240 416 / 2e-145 nudix hydrolase homolog 8 (.1) Potri.003G080400 [exp] 209 / 2e-65 AT5G47240 401 / 1e-139 nudix hydrolase homolog 8 (.1) Potri.018G069100 [exp] 192 / 3e-59 AT5G47240 316 / 3e-106 nudix hydrolase homolog 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10012319 pacid=23176753 polypeptide=Lus10012319 locus=Lus10012319.g ID=Lus10012319.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCTTTCTCTTCTTCGGACACTGCAGTTTCAGCGGATGCCAACGTTCATGGAGTGAAAGAGATTGAATTGCTGGATGCAACTGAGGATTGGT ACGGTGGGCTAACCATGGAAGTCAACGACCCTATAGATGCTGCGGATTTTGCGGCTCGGCTTAGGTATTCCATCTCCAGATGGAAAAAACAGGGGAAGAA AGGTATTTGGATCAAGTTACCCACTCGCCAGTCTAACCTAGTCCATCCAGTTATTCAGGAAGGGTTTAGGTTTCATCATGCTGAATCAGACTATGTGATG CTGGTGCGTTGGCTGCCTGAGCATCTTCCTGATACTCTCCCCATCAATGCCTCTCACCGGGTTGGCGTTGGGGCGCTTGTGGTCAATGAAAACAAAGAGG TGCTGGTAGTTACTGAGAGACACGGTGGATTCGAAGGCACCGGGTATTGGAAGTTGCCAACCGGTGTAGTCGAAGAGGGAGAAGACATATGGGCAGCTGC AGTTAGAGAAGTCAAAGAAGAAACTGGAATTGATGCGGAATTTGTGGAAATGTTAACGTTCAGGCAAAGTCACAAATCATTCTTCAGCAAATCAGACCTG ATGTTTGTCTGCATGTTGCGACCACTTTCGGCTAACATCACTGCTCAACAATCAGAGATCGAAGCAGCCAAGTGGATGCCGGTCAACGAGTATGTAGAGC AACCTTACAATCAGAAGCATGGACAATTCAGATCCATAGCAGAGATTTGCAAAGCGAAAGTGGAAGGTGCATATGCGGGGTTCTCTGCTATGCCAGTGAA ATCAGCTTCAGGGAAGAAGGTCGACCTCTACTATAACAACCAGCAAGTTCAGAACAAACTATGA
AA sequence Show only first row Show all	>Lus10012319 pacid=23176753 polypeptide=Lus10012319 locus=Lus10012319.g ID=Lus10012319.BGIv1.0 annot-version=v1.0 MASSFSSSDTAVSADANVHGVKEIELLDATEDWYGGLTMEVNDPIDAADFAARLRYSISRWKKQGKKGIWIKLPTRQSNLVHPVIQEGFRFHHAESDYVM LVRWLPEHLPDTLPINASHRVGVGALVVNENKEVLVVTERHGGFEGTGYWKLPTGVVEEGEDIWAAAVREVKEETGIDAEFVEMLTFRQSHKSFFSKSDL MFVCMLRPLSANITAQQSEIEAAKWMPVNEYVEQPYNQKHGQFRSIAEICKAKVEGAYAGFSAMPVKSASGKKVDLYYNNQQVQNKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	0	1
AT2G46080			unknown protein		Lus10005122 [exp]	2.0	0.9159
AT5G04550			Protein of unknown function (D...		Lus10008987 [exp]	2.0	0.8937
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10031029 [exp]	3.0	0.8894
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	3.5	0.8828
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028639 [exp]	4.5	0.8817
					Lus10024821 [exp]	4.9	0.8761
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10030667 [exp]	6.3	0.8345
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037733 [exp]	7.4	0.8489
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	8.5	0.8574
AT1G59710			Protein of unknown function (D...		Lus10013281 [exp]	8.5	0.8560

Compare expression of checked genes

Lus10012319 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.