Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47650 254 / 2e-84 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G12720 249 / 2e-82 ATNUDX7, GFG1, AtNUDT7, NUDT7 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) AT4G25434 233 / 3e-76 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT2G04450 231 / 3e-75 ATNUDX6, ATNUDT6 nucleoside diphosphates linked to some moiety X 6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, nudix hydrolase homolog 6 (.1) AT5G47240 225 / 5e-72 ATNUDT8 nudix hydrolase homolog 8 (.1) AT2G04430 222 / 2e-71 ATNUDT5 nudix hydrolase homolog 5 (.1) AT2G04440 115 / 5e-31 MutT/nudix family protein (.1) AT5G06340 40 / 0.0009 ATNUDX27 nudix hydrolase homolog 27 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006366 [exp] 517 / 0 AT5G47650 281 / 4e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10012319 [exp] 428 / 1e-152 AT5G47650 310 / 4e-106 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006365 [exp] 413 / 2e-146 AT4G12720 300 / 1e-101 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) Lus10039079 [exp] 251 / 4e-82 AT5G47650 345 / 3e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10038780 [exp] 248 / 8e-81 AT5G47650 345 / 1e-118 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10040169 [exp] 213 / 5e-67 AT5G47240 409 / 7e-143 nudix hydrolase homolog 8 (.1) Lus10004371 [exp] 212 / 3e-64 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10004195 [exp] 42 / 0.0003 AT5G06340 236 / 1e-78 nudix hydrolase homolog 27 (.1) Lus10029398 [exp] 42 / 0.0003 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G168400 [exp] 291 / 5e-98 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.005G077500 [exp] 285 / 6e-96 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G106100 [exp] 269 / 5e-90 AT5G47650 332 / 9e-115 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G127700 [exp] 268 / 1e-89 AT5G47650 323 / 1e-111 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G368000 [exp] 262 / 4e-87 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 244 / 7e-80 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.006G005400 [exp] 244 / 1e-79 AT5G47650 347 / 7e-120 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G154300 [exp] 215 / 5e-68 AT5G47240 416 / 2e-145 nudix hydrolase homolog 8 (.1) Potri.003G080400 [exp] 208 / 2e-65 AT5G47240 401 / 1e-139 nudix hydrolase homolog 8 (.1) Potri.018G069100 [exp] 197 / 2e-61 AT5G47240 316 / 3e-106 nudix hydrolase homolog 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10012320 pacid=23176829 polypeptide=Lus10012320 locus=Lus10012320.g ID=Lus10012320.BGIv1.0 annot-version=v1.0 ATGGCGTCGTTTTCCTCTTCTTCAGAAACTGCGGATGCCAATGTTCATGGAGTGGAGGGGATTGAACTGCTGGAGGCTACTCCGGATCCGTATGGTGGGC TAACCATGGAAATCAAGGAGCCTATGGAAGCTGTGGATTTCGCAGCTCGGCTCAGGTATTCCATCTCCAAATGGATTGAACAGGAGAAGAAGGGTATTTG GATCAAATTGCCCACTCGCCAGTCTAACCTCGTCGATTCAGTTATTAAGGAAGGGTTTAGGTTTCACCACGCTGAATCAGACTACGTGATGCTAGTGCGT TGGCTGCCTGAGAATCTTCCTGATACTCTTCCCATCAATGCCACTCACAGGATTGGCGTTAAGGCGCTCGTGGTCAACGAAAACAAAGAGGTGCTGGTAG TTACAGAGAAACTTGGCAAATTGGCAGGCATCGAGTATTGGAACTTGCCAACTGGTGTAGCCCAAGAGGGAGAAGACATATGGGCAGCTGCAGTTAGAGA AGTGAAAGAAGAAACTGGAATTGATGCTGAATTTGAAGAAATGATAACATTCAGGCAAAGTCACAAGTCATACTTTAGCAAATCAGACCTGATGTTTGTC TGCCTGTTGCGACCAGTTTCTGCTGACATCACTATTCAAGAATCAGAGATTGTAGCATCCAAGTGGATGCCGGTCGACGAGTATGTAGAGCAGCCCCACA ATAAGAAGCATGGGCAGTTCAGATACGTAGCGGAGATTTGCAAAGCCAAGGTGGAAGGTGCATATGTGGGTTTCTCTGCTATGGCAGTGAAATCTTCTTC AGGGAAAAAGGTTGACCTCTACTCTAACCACTGGGCAGAATGA
AA sequence Show only first row Show all	>Lus10012320 pacid=23176829 polypeptide=Lus10012320 locus=Lus10012320.g ID=Lus10012320.BGIv1.0 annot-version=v1.0 MASFSSSSETADANVHGVEGIELLEATPDPYGGLTMEIKEPMEAVDFAARLRYSISKWIEQEKKGIWIKLPTRQSNLVDSVIKEGFRFHHAESDYVMLVR WLPENLPDTLPINATHRIGVKALVVNENKEVLVVTEKLGKLAGIEYWNLPTGVAQEGEDIWAAAVREVKEETGIDAEFEEMITFRQSHKSYFSKSDLMFV CLLRPVSADITIQESEIVASKWMPVDEYVEQPHNKKHGQFRYVAEICKAKVEGAYVGFSAMAVKSSSGKKVDLYSNHWAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012320 [exp]	0	1
					Lus10001241 [exp]	1.4	0.9216
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10033875 [exp]	9.2	0.9054
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10010695 [exp]	13.8	0.9145
AT1G63380			NAD(P)-binding Rossmann-fold s...		Lus10006698 [exp]	14.1	0.8972
					Lus10001993 [exp]	15.7	0.8513
AT5G57850			D-aminoacid aminotransferase-l...		Lus10011382 [exp]	17.9	0.9021
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10040932 [exp]	18.4	0.8882
AT4G07950			DNA-directed RNA polymerase, s...		Lus10030228 [exp]	19.1	0.8703
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10014036 [exp]	19.5	0.8987
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10015921 [exp]	21.5	0.9016

Compare expression of checked genes

Lus10012320 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.