Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07790 599 / 0 DGCR14-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006367 [exp] 904 / 0 AT3G07790 654 / 0.0 DGCR14-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G222100 [exp] 673 / 0 AT3G07790 609 / 0.0 DGCR14-related (.1) Potri.014G164200 [exp] 624 / 0 AT3G07790 563 / 0.0 DGCR14-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09751 [flax] [poplar] Es2 Nuclear protein Es2
Representative CDS sequence Show only first row Show all	>Lus10012321 pacid=23176826 polypeptide=Lus10012321 locus=Lus10012321.g ID=Lus10012321.BGIv1.0 annot-version=v1.0 ATGCTTCTCTCTCCGGGTCACTCGCCGCGCCAAATCTCGTCTCCATCTCCGTCTCTCGTCTCGGAGGATGCTCACCGGCTCTCCTCCTCTTCCAAGGGAA GCGCTTCTTCGGCCATCACGCCAGCGAGTTCCAGGAAACGTTCTCGAGTCCTCGATGAGGACACCTACGTAGCTGCAATCGAGAAGATCATCGAGCGGGA TTACTTCCCCGACATCTCGAAGCTCCGTGACCGTCTCGATTGGCTGGAGGCGGTGAAGACAGGCGATCCGATGCAGATACGGGACGCTCAGTTGAAGATC ATAGAGCGGCGGGGGAAGAGGGCTTTGGGATCTGATGCCAGCATTCGAGGAAGAAGCCAGACCAGGACTCCAGGTTCGACTTTTATGCGTAGTTTTACCC CTTTGGATGAATTCGATAATAGATCTCCGAGTGTGTTCGACGCTGAGTTGGCTGGTAACGGAGGAGAGGCCAGCGGGAACGATGCCGTTGATGTGGATGA ATCTTTAGGGTTAGACGCGTTTCTTAGGAGGTATACTAGCGAGGATAATGATAGTTTTGCGAAGATATTAACCAAAGTGAACAAGAAGAGGAAAGAGAAG TATGGTCATCTGTTGGAAGGTGAGAAAGAAGATGTTAAGTTGATTGAAGATGTGAAGCTGGATAGGGTTACTGATGGTTATGGGACTTCCGATCAGCCAC CAAGTACATTGGAAGGCTGGAAGTATACAGCTAAGAATTTGCTCATGTATCACCCAGCTGACAGGGGTGAAGTTGCTTTAACTAAGGAAGAGCGTGATGC TAGATTGCAGGCATTAACCAAAGAGATCAACAAGACGAGCACTCGGTTCCATGGTAAGACCATGGACACAAGGCCGAATGATGATGGTACTCTCGAAGTG CTTTATACTCCGGTTGTAGGGGCGACTCCCATGCCCATGTCGGATAGATATGGGGATAAGATGAAGAAGTACGATCTAGACGATCTTCGGAAGACTCCTA ATATGTTCTATGCAGAATCAGCAAAGAAGGCCGAGAATGGCTACAACTTTGTCAAGACACCTTCGCCTGCTCCAGGGGTCGACGAATCGCCGTTTATCAC GTGGGGTGAGATCGAGGGGACGCCATTAAGATTGGAGACTGAAGACACACCAATCGACATCGGTGGGAGTGGGGAAAGAACGAACTTCAGAATCCCGCAC CCACCTGCAAGAGACGAAATGGCTCACTCGTTGTCGAGAGATGCTGCAAGGAAGTTGAGGGATCGATCCAAGTTGTTCCGAAAACCACCGTTGCCTTCCC CGAGTCGAGGAGGAAGCTCCAGCCCGAGCGTTCGAACGCTGTCCCCTGCTGCACAGAAGTTTGTGAGGAATGCGATTTCTAAGTCTTCGGCCACTGTTGA TGAATCACTCCGTGCTAGCTATAGAGGAAGAAGTCCTTCAATTACTACTCCTAAAGCTGGAAGAAGTAGTTCTAGGTTTGGAAGAGATGATAGCAGCATG GTTTCCAGGTCACCTTCTTTAAGGGATGGCTCTAATCCTCCTTGCTAA
AA sequence Show only first row Show all	>Lus10012321 pacid=23176826 polypeptide=Lus10012321 locus=Lus10012321.g ID=Lus10012321.BGIv1.0 annot-version=v1.0 MLLSPGHSPRQISSPSPSLVSEDAHRLSSSSKGSASSAITPASSRKRSRVLDEDTYVAAIEKIIERDYFPDISKLRDRLDWLEAVKTGDPMQIRDAQLKI IERRGKRALGSDASIRGRSQTRTPGSTFMRSFTPLDEFDNRSPSVFDAELAGNGGEASGNDAVDVDESLGLDAFLRRYTSEDNDSFAKILTKVNKKRKEK YGHLLEGEKEDVKLIEDVKLDRVTDGYGTSDQPPSTLEGWKYTAKNLLMYHPADRGEVALTKEERDARLQALTKEINKTSTRFHGKTMDTRPNDDGTLEV LYTPVVGATPMPMSDRYGDKMKKYDLDDLRKTPNMFYAESAKKAENGYNFVKTPSPAPGVDESPFITWGEIEGTPLRLETEDTPIDIGGSGERTNFRIPH PPARDEMAHSLSRDAARKLRDRSKLFRKPPLPSPSRGGSSSPSVRTLSPAAQKFVRNAISKSSATVDESLRASYRGRSPSITTPKAGRSSSRFGRDDSSM VSRSPSLRDGSNPPC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07790			DGCR14-related (.1)		Lus10012321 [exp]	0	1
AT3G07790			DGCR14-related (.1)		Lus10006367 [exp]	1.0	0.9306
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Lus10040215 [exp]	4.9	0.8630
AT2G27260			Late embryogenesis abundant (L...		Lus10013329 [exp]	7.7	0.8620
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Lus10024494 [exp]	7.9	0.7898
AT3G56880			VQ motif-containing protein (....		Lus10012292 [exp]	9.9	0.8404
AT5G11070			unknown protein		Lus10001943 [exp]	10.2	0.8482
AT3G03980			NAD(P)-binding Rossmann-fold s...		Lus10020265 [exp]	10.6	0.8518
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10016801 [exp]	14.4	0.8352
AT5G55670			RNA-binding (RRM/RBD/RNP motif...		Lus10038758 [exp]	16.6	0.7614
AT2G27260			Late embryogenesis abundant (L...		Lus10005216 [exp]	19.9	0.8408

Compare expression of checked genes

Lus10012321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.