Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04880 278 / 2e-89 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2) AT4G26640 259 / 8e-82 WRKY ATWRKY20, WRKY20 WRKY family transcription factor family protein (.1.2) AT2G38470 228 / 2e-69 WRKY ATWRKY33, WRKY33 WRKY DNA-binding protein 33 (.1) AT2G03340 225 / 2e-68 WRKY WRKY3 WRKY DNA-binding protein 3 (.1) AT5G07100 206 / 1e-63 WRKY WRKY26 WRKY DNA-binding protein 26 (.1.2) AT1G13960 211 / 3e-63 WRKY WRKY4 WRKY DNA-binding protein 4 (.1.2) AT3G01080 203 / 3e-61 WRKY ATWRKY58, WRKY58 WRKY DNA-binding protein 58 (.1) AT4G26440 207 / 4e-61 WRKY ATWRKY34, MSP3, WRKY34 MICROSPORE-SPECIFIC PROMOTER 3, WRKY DNA-binding protein 34 (.1) AT2G30250 184 / 3e-54 WRKY ATWRKY25, WRKY25 WRKY DNA-binding protein 25 (.1) AT2G37260 181 / 2e-53 WRKY DSL1, ATWRKY44, TTG2 TRANSPARENT TESTA GLABRA 2, DR. STRANGELOVE 1, WRKY family transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006368 [exp] 778 / 0 AT2G04880 283 / 5e-90 zinc-dependent activator protein-1 (.1.2) Lus10043167 [exp] 260 / 1e-81 AT4G26640 473 / 9e-163 WRKY family transcription factor family protein (.1.2) Lus10016595 [exp] 258 / 1e-80 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10032580 [exp] 253 / 2e-80 AT4G26640 369 / 5e-125 WRKY family transcription factor family protein (.1.2) Lus10003769 [exp] 244 / 9e-75 AT4G26640 524 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10026634 [exp] 226 / 9e-70 AT1G13960 409 / 1e-139 WRKY DNA-binding protein 4 (.1.2) Lus10001265 [exp] 228 / 1e-69 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10012215 [exp] 229 / 2e-69 AT2G38470 393 / 2e-131 WRKY DNA-binding protein 33 (.1) Lus10030424 [exp] 224 / 1e-68 AT1G13960 421 / 7e-144 WRKY DNA-binding protein 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164300 [exp] 365 / 3e-123 AT2G04880 280 / 5e-89 zinc-dependent activator protein-1 (.1.2) Potri.002G221600 [exp] 322 / 5e-108 AT2G04880 255 / 3e-81 zinc-dependent activator protein-1 (.1.2) Potri.001G361600 [exp] 259 / 4e-81 AT4G26640 540 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.011G087900 [exp] 250 / 2e-77 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2) Potri.010G163000 [exp] 226 / 4e-69 AT1G13960 431 / 5e-147 WRKY DNA-binding protein 4 (.1.2) Potri.019G123500 [exp] 228 / 5e-69 AT2G38470 299 / 3e-94 WRKY DNA-binding protein 33 (.1) Potri.016G128300 [exp] 228 / 5e-69 AT2G38470 377 / 8e-125 WRKY DNA-binding protein 33 (.1) Potri.011G169300 [exp] 229 / 5e-68 AT5G56270 588 / 0.0 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 2, WRKY DNA-binding protein 2 (.1) Potri.013G153400 [exp] 221 / 4e-66 AT2G38470 329 / 5e-106 WRKY DNA-binding protein 33 (.1) Potri.008G091900 [exp] 218 / 5e-66 AT2G03340 407 / 7e-138 WRKY DNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10012322 pacid=23176796 polypeptide=Lus10012322 locus=Lus10012322.g ID=Lus10012322.BGIv1.0 annot-version=v1.0 ATGAAACACAGCAAACGAAAAGCCCCTTCGACAGCAGAACAGCCCTTGCAATCTGTGAAGGATGGAAGAAGTCCTGCGATACGCGAGAAAGTGTTGGAGG ATGGATACAACTGGCGAAAGTACGGGCAGAAACTTGTCAAAGGCAGTGAATTCATTCGGAGCTACTACAGATGTACGCATCCAAACTGTCAAGTGAAGAA GCAATTGGAACGTTCGCACGAAGGGAAACTTGCGGATATCGTTTATTTCGGTCAGCACGATCATCCCAAGCCGCAATCCAACATTCCACTGACAGTAGGC AGCAAGGTACGGCCTCCAATCAATTCCGTGAATGCATCGCAGATGTCAACAGTAACATCCAGTGAGGATGTGAAAGCTGTGCCACCTGAATCAGCCAGGA AGAGGGACGAAATCGATAATGATGATGATCCCCAGTCGAAACGACAAAAGAAAGTGAACCGCAGTGTCGAGCCTTCTGCCGTAGTAGAGAAGCCCGTTGG CGAACCACGCATCGTTGTTAAGACCTTAAGTGAGGAAGATATCGTAAATGATGGATATCGTTGGCGCAAATATGGGCAAAAGATGGTCAAGGGAAACCCT AACCCGAGGAGCTACTACAGGTGCTCTAGTGCTGGCTGTCCGGTTAAGAAACATGTGGAGAGGGCGTCTCACGATCCGAAGGTAGTTATAACCAGTTACG AGGGAGAACATGATCATGATATGCCACCTTCAAGGACTGTTACTAACAACATAGCTGGTCTGGATGTTCGTACGTCAACCCCTGCAAGTGGACAGCTCGA CAGCAAACCAGCTTGCAACACCCCGGATGCCAACAATAAAACGAAGGAACAACTCAATGGCGAGTCCAGCGCTAAAGCTATAGAAGGCACTGTTAAAGAA GCTGTTGATAAAGGGAATGACATGGTTTCCCCGCGGTCCAGTGCACTGGACGAAATGAAATCGAAAAACCAGCAGAACGACAAGTCATGTCCCAAGGAGG AAAGTGATGCTGCTGCTGGCCATGATTCAGATGCCACTACAAGCTTTATTCTCGAGGGCAGAACAAATGACGTGCAGCACACTTGCGAGTCAAAAGAGAC ATCAGAAGAGAACGGTAGTGCATCAGCATCAAATATCCACTCTGTTGCCAGTCACCCGGACAGCAAATCAACTCAGCAACACATCTCGGATTCGGAGGCT GTTCAAGCTAATTGA
AA sequence Show only first row Show all	>Lus10012322 pacid=23176796 polypeptide=Lus10012322 locus=Lus10012322.g ID=Lus10012322.BGIv1.0 annot-version=v1.0 MKHSKRKAPSTAEQPLQSVKDGRSPAIREKVLEDGYNWRKYGQKLVKGSEFIRSYYRCTHPNCQVKKQLERSHEGKLADIVYFGQHDHPKPQSNIPLTVG SKVRPPINSVNASQMSTVTSSEDVKAVPPESARKRDEIDNDDDPQSKRQKKVNRSVEPSAVVEKPVGEPRIVVKTLSEEDIVNDGYRWRKYGQKMVKGNP NPRSYYRCSSAGCPVKKHVERASHDPKVVITSYEGEHDHDMPPSRTVTNNIAGLDVRTSTPASGQLDSKPACNTPDANNKTKEQLNGESSAKAIEGTVKE AVDKGNDMVSPRSSALDEMKSKNQQNDKSCPKEESDAAAGHDSDATTSFILEGRTNDVQHTCESKETSEENGSASASNIHSVASHPDSKSTQQHISDSEA VQAN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Lus10012322 [exp]	0	1
					Lus10030198 [exp]	3.5	0.7434
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031891 [exp]	10.2	0.8443
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006094 [exp]	13.0	0.7425
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10031320 [exp]	16.3	0.7532
AT1G77800			PHD finger family protein (.1....		Lus10009786 [exp]	60.0	0.7250
AT1G53440			Leucine-rich repeat transmembr...		Lus10005550 [exp]	72.7	0.7154
AT4G28703			RmlC-like cupins superfamily p...		Lus10014252 [exp]	77.8	0.7122
AT1G01730			unknown protein		Lus10037855 [exp]	93.4	0.6948
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Lus10034966 [exp]	99.4	0.6645
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Lus10031347 [exp]	112.2	0.7035

Compare expression of checked genes

Lus10012322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.