Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35750 1278 / 0 AHK2 histidine kinase 2 (.1) AT1G27320 1038 / 0 AHK3 histidine kinase 3 (.1) AT2G01830 981 / 0 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT5G10720 169 / 2e-42 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT2G17820 166 / 2e-41 AHK1, ATHK1 histidine kinase 1 (.1) AT1G66340 137 / 5e-33 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 131 / 3e-31 ERS1 ethylene response sensor 1 (.1) AT2G47430 111 / 2e-24 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT3G23150 76 / 8e-14 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT3G04580 66 / 2e-10 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006370 [exp] 2023 / 0 AT5G35750 1267 / 0.0 histidine kinase 2 (.1) Lus10015773 [exp] 1009 / 0 AT1G27320 1395 / 0.0 histidine kinase 3 (.1) Lus10030772 [exp] 947 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10013250 [exp] 942 / 0 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10028992 [exp] 939 / 0 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10003686 [exp] 937 / 0 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10037032 [exp] 791 / 0 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10026917 [exp] 174 / 5e-44 AT5G10720 1063 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Lus10020115 [exp] 161 / 3e-40 AT5G10720 853 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164700 [exp] 1400 / 0 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.003G171000 [exp] 1030 / 0 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.008G137900 [exp] 1014 / 0 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.010G102900 [exp] 1013 / 0 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.001G057400 [exp] 1003 / 0 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.018G011400 [exp] 171 / 5e-43 AT5G10720 707 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.006G270500 [exp] 164 / 5e-41 AT5G10720 725 / 0.0 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) Potri.007G056400 [exp] 158 / 5e-39 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.005G111700 [exp] 158 / 7e-39 AT2G17820 1435 / 0.0 histidine kinase 1 (.1) Potri.001G204200 [exp] 143 / 8e-35 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0165 [flax] [poplar] Cache PF03924 [flax] [poplar] CHASE CHASE domain
Representative CDS sequence Show only first row Show all	>Lus10012325 pacid=23176812 polypeptide=Lus10012325 locus=Lus10012325.g ID=Lus10012325.BGIv1.0 annot-version=v1.0 ATGTCAGTGAACTGCAATCTCTCTCCCTTTAAGGGCTCGTTTCTTTGCAATTGCAAGCTCCAGAAGCACAAGGAGTCTTCTTCTTCTTCTTCACATGCTC CTAGTTGGATGTGGACGTGGATGGGAAAGCTTCCACTCTTGTTGATATTGGGGGCTGCTATAGTTCTAGGGAGCATTTTGGTTGGCTTGGACAGCGATAG TGATGTCATACGCCAGGAGAAAGAGATGGTTTCATATTCAAGTGGAGAAATACCTGAGGGCTTCGTTTGTCACCGCTGTGCTTCTCACAGCAAGCTCTAT GCTCTTCCTACCTTCTTCTCTGCTGCCAGGATATTTTTACATGAAGCAAAGGATCAAATAGCTCGTGTCTTGAAGTTTATCTGCTTACAGAATAAGGAAG ATGCCTCGTATGTATATGCTTGTGGTACAATGAAAGGATGTTGTTGGATCGTAGCTTCTGCCATGCTGCTTTGCTGTGTGTTTCTTTACCTCCGTCTTGT TGGTCAGAGGGAGGAAACATCGGTTGGAACTGAACCTGTCTCTCTGCCGAGACATCTGATACAGCTCATCAAGCAGGCAATGCCCGGAAATTTGAGGACG ATGCTGCTCATAGTGTTTCTCGTTGCTGGTTTTTCTTTGGCATTGCGTTACTTTTGGATAGGGAATCTGGAATATTATGCAAAGAGAGAAGAGACCCTTA TTAACATGTGCGACGAGAGAGCTCGAATGCTGCAGGACCAATTTAATGTTAGCATGAACCATGTTCATGCCTTGGCTGTTCTGGTATCTACCTTCCACCA TGGGAAAAATCCTTCAGCTATTGATCAGAAAACATTTCGTGAGTATACGGAGAGGACGTCTTTCGAGAGGCCACTTACTAGCGGGGTTGCGTATGCTTTA AAAGTTACTCACTCGGAGAGGGAGCAATTTGAGAAACATCATGGTTGGACAATTAAGAAAATGGAAGCAGATGATCAGGCACCCCTTCAAGATTGCATTC CAGATAAGCTAGATCCTGCACCCCTTCAAGATGAATATGCACCTGTTATATTTTCTCAAGAAACAGTCTCTCATATTGTCTCCATCGACATGATGTCTGG AAAGGAAGATCGCGAGAACATCTTGCGTGCAAGGGCATCTGGGAAGGGAGTTTTGACATCTCCTTTTAAGCTCTTGAAATCTAATCACTTGGGAGTTGTA CTCACATTTGCAGTATATAGCGTGCCTCTTCCTCCACATGCAACGTCAGAACAACGGGTTGAAGCAACGATGGGGTACCTTGGGGCATCTTATGATGTAC CATCATTGGTGGAGAAGCTCCTGCATCAACTTGCTAGCAGGGAGACCATTGTTGTGGAAGTTTACGACACCACTAATGCATCTGCTCCCATTCTAATGTA TGGAAATGATGTTTCTGATGACACAGCCCTATTACGAACCAGCAACCTCGACTTTGGGGATCCAGCGAGGAAGCATGAAATGCACTGCAGATTTAAGCAA AAAGCTTCAATTCCGTGGTCGGCTTTATCTACGCCAACTTTAATCCTATCTGTTACTTTTCTTCTTGGATATATCTTTTATCGATTCATCAAGGAAATTG AAGTGATGACCGGACTGAAAATACGTGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTCGCAACTGTTTCCCATGAGATCAGGACTCCAATGAATGG CGTTTTAGGCATGTTGCAAATGCTGATGGATACGGAGCTTGATGACAAACAAAATGACTATGTTGAGACTGCTCATCGTAGTGGGACAGAACTAATCTCA TTGATAAATGAGGTTCTTGATCAGGCTAAGATAGAATCAGGCAGGCTTGAGCTGGAAGCTGTTCCTTTCGATCTGCGGTCTGTTCTTGACAATGTTTTCT CGCTTTTTTCCGTAAAATCCAGTGAAAAGGGGATCGAGTTAGCCATTTATGTCTCTGATCAAGTGCCTCAAGTGGTGATAGGCGATCCCGGAAGATTTAG ACAGATCATTACAAATCTTGTTGGCAATTCAGTCAAGTTTACACCTGAGAAGGGGCACATCTTTGTGTCAGTCCATCTTGCAGACCAAGTAATAACCCCG CTGGAAATTCAGGACCCAGTTCTAAAACTTTGTGTGGATTCAGCTCAGGATGGGTCTAGCAAGTCTTACAATACATTAAGTGGCTCTCCTGTGGTCAACA GATGGAAAAGTTGGGAGAACTTCAAGAAGCCAGACAGAGTGGACACAAAGGAACCATCGATGATTAGATTACTAGTTACAGTAGAGGATACTGGAGTTGG TATCCCGCTAGATGCACAAAGCCGCATTTTCACTCCATTCATGCAGGCTGACAGTTCCACTTCTCGAACATATGGTGGAACTGGAATTGGATTGAGCATT TGCAAGCGTCTGGTCGATCTCATGGGTGGTGAGATGGGTTTCGTTAGTGAACGTAATGTTGGCAGTACTTTCTCCTTTACTGCTTGTTTCAGCAAAGGGG AGTTGAGTTCCCTTGATACCAAGTGGCAAGCTTTTGATACCACTATTCTGGATTTTAGAAAGTTAAAAGCTTTGGTAATCGACCCGAGAAGTATACGAGC TGAGATCAGTCGGTATCATCTTGAGAGACTAGGAATATCCGTGAACATTGCTTCATCTTTAAAAGCAGCACGCCTTTTTCTGTCTGGTCAAGCCGATATA TCGATGGTCCTGATTGACAAAGATGCTTGGGATGAAGAAAGTGACGGTGCTTCCCATCTCTCACTTAGGGACACAGTACAAAATTTCATTGCAGAATCTC AAGTGAACCTTCCCAAGATTTTTCTCTTGGCCACCACCATAACCCCTGATGAACGTCGCGAGCTGAAATCAGCTCATGTGGTAGATGACGTGCTTATGAA GCCGCTTCGGGTAGGTGTCTTGACTGGTTGTTTACAACAAGCCCTTGGAAGTGGCAAAAAGATTCAAGTCAAAAGGAAGAAACCGACGATTCTTCAGAAT CTGCTGCGTGGAAAGCATATCTTGGTGGTGGATGACAATGCTGTTAACAGAAGAGTGGCACAGGGCGGTCTGGAGAGGTATGGAGCTGTTGTCACCTGTG TTAACGGTGGGAGAGCTGCGGTGGAGTTGCTTGAACCGCCACATAAATTCGATGCTTGCTTCATGGATCGCCATATGCCAGAAATGGATGGATTTGAAGC TACGCGTCTTATTCGAACTAGGGAGACTGAGATCAATGAGCAGATAGCATCTGGTGAAGCATCAATTGAGAATTATGGGGATAAGCCATATTGGCATACA CCAATAATGGCAATGACAGCTGATGTGATGCAGGCTACAAGTGAAGAATGCAGGAAGTGTGGAATGGATGATTATGTTGCAAAACCATTTGATGAGGAGC AACTTTACAATGCAGTGGCTCGTTTCTTCGAGTCTGGTGATAAGAGTGGCTGA
AA sequence Show only first row Show all	>Lus10012325 pacid=23176812 polypeptide=Lus10012325 locus=Lus10012325.g ID=Lus10012325.BGIv1.0 annot-version=v1.0 MSVNCNLSPFKGSFLCNCKLQKHKESSSSSSHAPSWMWTWMGKLPLLLILGAAIVLGSILVGLDSDSDVIRQEKEMVSYSSGEIPEGFVCHRCASHSKLY ALPTFFSAARIFLHEAKDQIARVLKFICLQNKEDASYVYACGTMKGCCWIVASAMLLCCVFLYLRLVGQREETSVGTEPVSLPRHLIQLIKQAMPGNLRT MLLIVFLVAGFSLALRYFWIGNLEYYAKREETLINMCDERARMLQDQFNVSMNHVHALAVLVSTFHHGKNPSAIDQKTFREYTERTSFERPLTSGVAYAL KVTHSEREQFEKHHGWTIKKMEADDQAPLQDCIPDKLDPAPLQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVV LTFAVYSVPLPPHATSEQRVEATMGYLGASYDVPSLVEKLLHQLASRETIVVEVYDTTNASAPILMYGNDVSDDTALLRTSNLDFGDPARKHEMHCRFKQ KASIPWSALSTPTLILSVTFLLGYIFYRFIKEIEVMTGLKIRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDDKQNDYVETAHRSGTELIS LINEVLDQAKIESGRLELEAVPFDLRSVLDNVFSLFSVKSSEKGIELAIYVSDQVPQVVIGDPGRFRQIITNLVGNSVKFTPEKGHIFVSVHLADQVITP LEIQDPVLKLCVDSAQDGSSKSYNTLSGSPVVNRWKSWENFKKPDRVDTKEPSMIRLLVTVEDTGVGIPLDAQSRIFTPFMQADSSTSRTYGGTGIGLSI CKRLVDLMGGEMGFVSERNVGSTFSFTACFSKGELSSLDTKWQAFDTTILDFRKLKALVIDPRSIRAEISRYHLERLGISVNIASSLKAARLFLSGQADI SMVLIDKDAWDEESDGASHLSLRDTVQNFIAESQVNLPKIFLLATTITPDERRELKSAHVVDDVLMKPLRVGVLTGCLQQALGSGKKIQVKRKKPTILQN LLRGKHILVVDDNAVNRRVAQGGLERYGAVVTCVNGGRAAVELLEPPHKFDACFMDRHMPEMDGFEATRLIRTRETEINEQIASGEASIENYGDKPYWHT PIMAMTADVMQATSEECRKCGMDDYVAKPFDEEQLYNAVARFFESGDKSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35750		AHK2	histidine kinase 2 (.1)		Lus10012325 [exp]	0	1
					Lus10039504 [exp]	5.1	0.6995
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	7.1	0.7485
AT1G16590		REV7, ATREV7	DNA-binding HORMA family prote...		Lus10006836 [exp]	10.6	0.6950
AT4G39680			SAP domain-containing protein ...		Lus10016433 [exp]	19.6	0.7143
AT1G69220		SIK1	Protein kinase superfamily pro...		Lus10036915 [exp]	21.4	0.6889
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10000260 [exp]	23.2	0.6412
AT5G41620			unknown protein		Lus10028746 [exp]	24.5	0.6947
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10026691 [exp]	24.8	0.6270
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10024455 [exp]	28.7	0.7157
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	29.2	0.7219

Compare expression of checked genes

Lus10012325 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.