Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48160 856 / 0 OBE2 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT3G07780 805 / 0 OBE1 OBERON1, Protein of unknown function (DUF1423) (.1) AT3G63500 280 / 1e-83 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT1G14740 263 / 1e-78 Protein of unknown function (DUF1423) (.1) AT5G57380 64 / 1e-10 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT3G24440 57 / 3e-08 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) AT2G18880 42 / 0.0009 VIL3, VEL2 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006372 [exp] 1147 / 0 AT5G48160 871 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10016399 [exp] 297 / 2e-88 AT3G63500 717 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10019718 [exp] 263 / 4e-76 AT3G63500 665 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10013248 [exp] 242 / 3e-74 AT1G14740 466 / 7e-160 Protein of unknown function (DUF1423) (.1) Lus10030770 [exp] 229 / 2e-70 AT1G14740 394 / 7e-133 Protein of unknown function (DUF1423) (.1) Lus10030769 [exp] 63 / 1e-11 AT1G14740 136 / 5e-38 Protein of unknown function (DUF1423) (.1) Lus10010550 [exp] 60 / 4e-09 AT1G05410 356 / 1e-118 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10042869 [exp] 57 / 3e-08 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10028170 [exp] 55 / 9e-08 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164800 [exp] 1039 / 0 AT5G48160 859 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.002G221500 [exp] 999 / 0 AT5G48160 811 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.009G059000 [exp] 308 / 1e-92 AT3G63500 693 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.010G102600 [exp] 302 / 2e-92 AT1G14740 773 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.008G138100 [exp] 299 / 2e-91 AT1G14740 729 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.001G264100 [exp] 298 / 9e-89 AT3G63500 660 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.018G091500 [exp] 53 / 7e-07 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.010G086600 [exp] 52 / 1e-06 AT1G05410 442 / 2e-152 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.006G167800 [exp] 48 / 2e-05 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.002G111600 [exp] 44 / 0.0002 AT2G18880 262 / 7e-81 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF07227 [flax] [poplar] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Lus10012327 pacid=23176779 polypeptide=Lus10012327 locus=Lus10012327.g ID=Lus10012327.BGIv1.0 annot-version=v1.0 ATGGGTGCATCCTCTGGTTCTAATATCATTGCCAAAATGTTGCCTCCGCGTCAGCAGCCCCGTCCAAGTGGATTGCAGACTTCTTTGTCGCTTGTCCCAT CTGATGCTCGCTTGTCCCCTGATGCTCAGGAGCCGAGATCTAACTCTGACAATGTCCGCGAGTCCCCTACCGAGAGTGCCAGTTCACGGGAAACTTGGCC TACTGCCGAGGCTATCATGGCAAAGAAGTTGGAGAATGGGAAGGCTGAGAACGATGGTCCCGAGCAGTCTGTCATTCGTCGACTGTCTTCTGCTGACAGG ATAACTCTTCGTGACATAGCTAGAGAGAGAGTTGATGTGATCTCAGAGAAGATGCACCGACTCCCCGACGAGTTTCTGGATGAGCTCAAAAATGGACTCC GCATGATCCTTGAAGGGAACGGTGGCTCGCAGCAGAGGGAAGAGTTCTTGATTTTGCAGAAGCTTGTGCAGGGTAGGGCGGATCTGACAGCTAAGACATT GATTAGAGCTCACCGTCTACAGCTTGAAATCCTTGTAGCCATAAATACTGGAATCCAGGCTTTCTTGCATCCCAACATTAGTTTCTCTCAGACGGCTCTA ATTGAGGTCTTTGTGTTCAAGAGATGCAGAAATATAGCTTGCCAAAACCAACTTCCAGCTGATGATTGCACCTGTGACATATGCACCAACAGAAATGGAT TCTGTAATCTTTGCATGTGTGTGATCTGCAACAAGTTTGACTTTGAAGTGAATACTTGTCGGTGGGTTGGCTGTGACTTGTGTTCTCATTGGACTCATAC TGATTGTGCAATTCGTGATGGGCAAATTTCTATGGGTCCATCAACCAAAAGCGGAGCCGGACCAGTTGAAATGCTTTTCCGATGCCGTGCTTGTAACAGA ACATCAGAACTCTTAGGTTGGGTAAAGGATGTTTTCCAACATTGTGCACCAGCATGGGAGAGAGATGCCCTAATGAGGGAGCTTGACTTCGTGAGTAGAA TCTTCCGTGGTAGTGAAGATACTAGAGGAAGAAAACTCTTTTGGAAGTGTGAGGAGCTAATTGATAAAATGAAGGGTGGACTTGTGGAGTCTTCAGCTTG TGGAGCAATATTGATGTTCTTCCAAGAGATCGATGGCGACTCTCCAAAACTCCTGGAAAATGGGGAAGGCGGGAGATTAATTGCTCCCCAGGAAGCTTGC AGCAGGATCGCTGAAGTGGTACAGGAAGCGATAAGGAAAATGGAAATGGTTGCTGATGAGAAGATGAGAATGTTCAAAAAAGCCCGCATGGGACTTGAAG CTTGTGACCGTGAGTTGGAGGAAAAAGCCAAGGAAGTAACGGAGCTGAAGATGGATAGGCAAAAGAAGAAGCTACAGATAGACGAGCTTGAAAGAATAGT GAGGCTTAAGCAGGCAGAGGCGGACATGTTCCAGCTCAAGGCTAACGAAGCGAAACGAGAAGCGGAGAGGCTGCAGAGGATAGCTCTTGCCAAGACGGAC AAATCGGAAGAAGAATATGCTAATAGCTATCTGAAGCTTCGGCTGAGCGAAGCTGAGGCGGAGAAGCAGTATCTTTTCGAGAAGATTAAGTTACAGGAAA GTTCTCGCACGTCACAGAGCGGAGGCGGGAGCGATCCATCACAGGGACTGTCATATTCCAAAATCCATGACCTGCTTCAAAGCTACAACGCAGGGTCAAA GTCAGACTCCCAGCCGAGTGACCGCCATCACTTCAGAACCAATCCGTGA
AA sequence Show only first row Show all	>Lus10012327 pacid=23176779 polypeptide=Lus10012327 locus=Lus10012327.g ID=Lus10012327.BGIv1.0 annot-version=v1.0 MGASSGSNIIAKMLPPRQQPRPSGLQTSLSLVPSDARLSPDAQEPRSNSDNVRESPTESASSRETWPTAEAIMAKKLENGKAENDGPEQSVIRRLSSADR ITLRDIARERVDVISEKMHRLPDEFLDELKNGLRMILEGNGGSQQREEFLILQKLVQGRADLTAKTLIRAHRLQLEILVAINTGIQAFLHPNISFSQTAL IEVFVFKRCRNIACQNQLPADDCTCDICTNRNGFCNLCMCVICNKFDFEVNTCRWVGCDLCSHWTHTDCAIRDGQISMGPSTKSGAGPVEMLFRCRACNR TSELLGWVKDVFQHCAPAWERDALMRELDFVSRIFRGSEDTRGRKLFWKCEELIDKMKGGLVESSACGAILMFFQEIDGDSPKLLENGEGGRLIAPQEAC SRIAEVVQEAIRKMEMVADEKMRMFKKARMGLEACDRELEEKAKEVTELKMDRQKKKLQIDELERIVRLKQAEADMFQLKANEAKREAERLQRIALAKTD KSEEEYANSYLKLRLSEAEAEKQYLFEKIKLQESSRTSQSGGGSDPSQGLSYSKIHDLLQSYNAGSKSDSQPSDRHHFRTNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10012327 [exp]	0	1
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10006372 [exp]	1.4	0.9015
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10022931 [exp]	2.2	0.9111
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Lus10020376 [exp]	7.5	0.8666
AT5G17240		SDG40	SET domain group 40 (.1)		Lus10035757 [exp]	7.9	0.8951
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10019638 [exp]	12.3	0.8365
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10028956 [exp]	12.4	0.8896
AT1G51550			Kelch repeat-containing F-box ...		Lus10034827 [exp]	16.0	0.8712
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10019189 [exp]	20.4	0.8901
AT1G68300			Adenine nucleotide alpha hydro...		Lus10034337 [exp]	23.5	0.8868
AT3G56680			Single-stranded nucleic acid b...		Lus10038997 [exp]	25.2	0.8816

Compare expression of checked genes

Lus10012327 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.