Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53700 1005 / 0 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 317 / 3e-98 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G09060 317 / 1e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 319 / 2e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 306 / 9e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63080 303 / 4e-93 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 302 / 2e-92 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 301 / 4e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 297 / 2e-91 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 295 / 6e-90 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006373 [exp] 1549 / 0 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 327 / 3e-100 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 319 / 1e-97 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030513 [exp] 301 / 2e-91 AT3G09060 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 302 / 3e-91 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 298 / 1e-89 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 301 / 7e-89 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014245 [exp] 291 / 1e-88 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027267 [exp] 288 / 2e-86 AT1G74580 813 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G013300 [exp] 1045 / 0 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 340 / 1e-105 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G111600 [exp] 338 / 1e-105 AT3G09060 860 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G234500 [exp] 315 / 3e-96 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 311 / 2e-95 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G040200 [exp] 315 / 2e-94 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 308 / 2e-93 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 305 / 4e-93 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271200 [exp] 303 / 4e-93 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 300 / 7e-92 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10012328 pacid=23176776 polypeptide=Lus10012328 locus=Lus10012328.g ID=Lus10012328.BGIv1.0 annot-version=v1.0 ATGGAAACCACTTCCTCTCTTGGCCTGAAGTGCCACTCTCTGTTCAATTTCCATCCATACCGTTTCCTCTCTTCTTCTTCTTCTTCTTCTTGTCACAAAT TCACATCCGATTCCATACTCTCTTTCGCATCCACAAGGCAGCACCATGTCACACTTGCTGCTTCCCAATCTCCACTACCTGCCAATTTCACCACGGCTGA GCTCCTCAACACCCCCCGCCGACAGCGCAACGAGTCTGCAGCGCTCCGGGTGTTCGATTGGGCTTCCAAGCAGCCCAATTTTGTGCCCGATGTCTCCGTT TACGAGGAGATGCTCCGGAAGCTAGGCGAATCTGGGTCGTTTGATTCGATGAATGGCATTTTGGAAGAGATGAGCAAGTCTGGCTGTCAAGCTAGCAGAG GTATGTTGTTGATTCTTGTTCAAAGCTACGCGGACTTCGACTTGTATGATGAAATCCCAGGGATACTCCAGTCCATGGAGGTTAGGTTCGGGTTGCAACC GGACACTCATCTATTCAACTTTCTACTCAATGTTCTTGTTGATGGCAACAAGTTGAAACTAGTTGAAATGGTTCATACGATTATGTTAGGAAGAGGGATT ACGCCTGATGTTTCCACGTTCAATATCTTGGTGAAGGCTTTGTGTAAGGCGCATCAAGTTAGTCCTTCCATTTCTATGATGGAGGAGATGCGAAGTTACG GTCTGGTTCCGGATGAGAGAACTTTCACAACCATTATGCAAGGGTTCATCGAAATTGGGGATTTGGATGGTGCATTGGGCATGAAAAAGAAAATGCTCCA AGCTGGGTGTCCCATGAGTGCTGTCACTGTGAATGTGCTGGTTAATGGCTACTGCAAACTTGGTAGAGTTTCGGAGGCACTGAGTTATATAGAAGAGGAA GTCTCGAATAATGGCTTCTTTCCAGATAGGTATACTTTCAACACGTTGGTGAACGGGCTATGTAAGGTTGGGCATGTTAAGCATGCTTTGGAGGTGATGG ATATGATGCTTGAACAAGGTTTTGATCTAGACATTTATACTTACAACTCTCTGATATCTGGGCTGTGCAAATCGGGTGAAGTTGACGAAGCAGTGGAGAT TCTTGAACAGATGATCTCGAGAGATTGCTCTCCTAACACGGTAACTTACAACACTTTGATAAGCAATTTGTGTAAGGACAACAAAGTTGAGGAAGCTACT AAACTCGCCCGTGTTCTGGCTGGCAAGGGGATTGCTCCTGATGCCTGCACATTTAATTCTCTCTTACAAGGTCTATGCTTGAGCAAGAATCATTCAGCTG CCATGGAGTTGTACGATGATATGAAGAATTCAGGGTGCCAACCTGATGAGTTTACATACAACATGTTGATCGGAAACCTTTGTTTCAGAGGGAAGCTAGA TGACGCTTTGAAACTGCTAAAAGAAATGGAATTGAGTGGCTGTGTAAGAAGCGTTATCACATACAATACTTTGATCGATGGGTTCTGCAAAAACAGGAGG ATTGAAGAAGCAGAGGAGATCTTTGACCAAATGGAAGTTCTAGGGGTATCAAGGAATTCATTGACATACAACGCACTTATTGATGGGCTGTGCAAGAACA GGAGGGTGGAGGATGCTGTCCAATTGATGGATCAGATGGTGACCGAAGGACTGAAGCCTGACAAGTTCACATACAATTCTATGCTGGCGTATTTCTGCAA ATCTGGGGATATACAAAAGGCTGCTGATATTGTCCAAACTATGTCCTCCAATGGTTGTGAACCGGATGTCATCACTTACGCAACTTTGATTGGTGGGCTG TGCAAAGCAGGTAAAGTGCAGGTAGCAAGTAAGCTCTTGAGAACCATTAAAATGAAAGGTCTTCCAGTCACGCCTCCTGCGTATAACCCTCTACTTCAAG CACTCTTTAGAAAGAAGAGAAAAGCAGAAGCCATGAGGCTCTTCAGAGAAATGATGGAGACTGTTGATCCTCCGAACGATGTCAGCTACAGGATTGTGTT TGGGGGGCTGTGCAGAAGTGGAGGGCCGATACAGGAAGCAGTGGATTTCTTGATTGAGATGATACAGGGAGGATACTTGCCTGAATTCGCAACCTTCTAT ATGCTGGCAGATGGACTTCGTGCTCTTGCCATGGAGAAGACGCTTGTCACGGTTGTTGATCTGGTCATGGAGGCAGCTAAGTTGTCCAAAAATGAAATGG TCATGATCAGAGGATTCCTCAAGATTGGCAAGTTCCAGGATGGGTTGGCCAATCTTGGAGGTATTCTTGAAAGCCGGATGCCCAGGAAATCGTTTTATAG ATGA
AA sequence Show only first row Show all	>Lus10012328 pacid=23176776 polypeptide=Lus10012328 locus=Lus10012328.g ID=Lus10012328.BGIv1.0 annot-version=v1.0 METTSSLGLKCHSLFNFHPYRFLSSSSSSSCHKFTSDSILSFASTRQHHVTLAASQSPLPANFTTAELLNTPRRQRNESAALRVFDWASKQPNFVPDVSV YEEMLRKLGESGSFDSMNGILEEMSKSGCQASRGMLLILVQSYADFDLYDEIPGILQSMEVRFGLQPDTHLFNFLLNVLVDGNKLKLVEMVHTIMLGRGI TPDVSTFNILVKALCKAHQVSPSISMMEEMRSYGLVPDERTFTTIMQGFIEIGDLDGALGMKKKMLQAGCPMSAVTVNVLVNGYCKLGRVSEALSYIEEE VSNNGFFPDRYTFNTLVNGLCKVGHVKHALEVMDMMLEQGFDLDIYTYNSLISGLCKSGEVDEAVEILEQMISRDCSPNTVTYNTLISNLCKDNKVEEAT KLARVLAGKGIAPDACTFNSLLQGLCLSKNHSAAMELYDDMKNSGCQPDEFTYNMLIGNLCFRGKLDDALKLLKEMELSGCVRSVITYNTLIDGFCKNRR IEEAEEIFDQMEVLGVSRNSLTYNALIDGLCKNRRVEDAVQLMDQMVTEGLKPDKFTYNSMLAYFCKSGDIQKAADIVQTMSSNGCEPDVITYATLIGGL CKAGKVQVASKLLRTIKMKGLPVTPPAYNPLLQALFRKKRKAEAMRLFREMMETVDPPNDVSYRIVFGGLCRSGGPIQEAVDFLIEMIQGGYLPEFATFY MLADGLRALAMEKTLVTVVDLVMEAAKLSKNEMVMIRGFLKIGKFQDGLANLGGILESRMPRKSFYR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53700		MEE40	maternal effect embryo arrest ...		Lus10012328 [exp]	0	1
AT3G53700		MEE40	maternal effect embryo arrest ...		Lus10006373 [exp]	1.0	0.9811
AT2G18710		SCY1	SECY homolog 1 (.1)		Lus10008901 [exp]	4.0	0.9441
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10000483 [exp]	4.5	0.9549
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10031417 [exp]	5.2	0.9489
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Lus10000862 [exp]	6.5	0.9394
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Lus10002394 [exp]	8.8	0.9352
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	8.9	0.9396
AT1G32990		PRPL11	plastid ribosomal protein l11 ...		Lus10010145 [exp]	10.6	0.9388
AT3G25920		RPL15	ribosomal protein L15 (.1)		Lus10010916 [exp]	11.0	0.9388
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10036021 [exp]	12.7	0.9376

Compare expression of checked genes

Lus10012328 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.