Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07770 1140 / 0 Hsp89.1, AtHsp90-6 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1) AT2G04030 934 / 0 Hsp88.1, AtHsp90.5, HSP90.5, CR88, EMB1956 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) AT4G24190 535 / 1e-178 AtHsp90-7, HSP90.7, SHD SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) AT5G52640 509 / 3e-170 AtHsp90-1, ATHS83, ATHSP90.1, HSP83, HSP81-1 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) AT5G56030 505 / 8e-169 AtHsp90.2, HSP90.2, ERD8, HSP81-2 HEAT SHOCK PROTEIN 90.2, EARLY-RESPONSIVE TO DEHYDRATION 8, HEAT SHOCK PROTEIN 90.2, heat shock protein 81-2 (.1.2) AT5G56010 505 / 9e-169 AtHsp90-3, HSP81-3 HEAT SHOCK PROTEIN 90-3, heat shock protein 81-3 (.1) AT5G56000 504 / 2e-168 Hsp81.4, AtHsp90.4 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006374 [exp] 1397 / 0 AT3G07770 1199 / 0.0 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1) Lus10019206 [exp] 902 / 0 AT2G04030 1283 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Lus10036843 [exp] 901 / 0 AT2G04030 1278 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Lus10027303 [exp] 527 / 3e-177 AT5G52640 1204 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10039008 [exp] 525 / 2e-176 AT5G52640 1204 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10027517 [exp] 524 / 5e-176 AT5G52640 1230 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10034535 [exp] 521 / 2e-173 AT4G24190 1225 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Lus10039281 [exp] 518 / 2e-173 AT5G52640 1226 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Lus10033135 [exp] 520 / 3e-173 AT4G24190 1224 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G164900 [exp] 1194 / 0 AT3G07770 1182 / 0.0 HEAT SHOCK PROTEIN 90-6, HEAT SHOCK PROTEIN 89.1 (.1) Potri.008G112700 [exp] 924 / 0 AT2G04030 1201 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Potri.010G136800 [exp] 923 / 0 AT2G04030 1232 / 0.0 HEAT SHOCK PROTEIN 88.1, EMBRYO DEFECTIVE 1956, HEAT SHOCK PROTEIN 90.5, Chaperone protein htpG family protein (.1.2) Potri.005G241100 [exp] 540 / 1e-180 AT4G24190 1227 / 0.0 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Potri.017G146600 [exp] 521 / 3e-175 AT5G52640 1174 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1) Potri.001G466000 [exp] 508 / 8e-170 AT5G56000 1132 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.016G003400 [exp] 502 / 1e-167 AT5G56000 1148 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.001G286700 [exp] 500 / 8e-167 AT5G56000 1118 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.006G002800 [exp] 498 / 3e-166 AT5G56000 1115 / 0.0 HEAT SHOCK PROTEIN 90.4, HEAT SHOCK PROTEIN 81.4 (.1) Potri.004G073600 [exp] 457 / 7e-151 AT5G52640 1021 / 0.0 HEAT SHOCK PROTEIN 83, HEAT SHOCK PROTEIN 81-1, HEAT SHOCK PROTEIN 90-1, heat shock protein 90.1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0025 [flax] [poplar] PF00183 [flax] [poplar] HSP90 Hsp90 protein
Representative CDS sequence Show only first row Show all	>Lus10012329 pacid=23176782 polypeptide=Lus10012329 locus=Lus10012329.g ID=Lus10012329.BGIv1.0 annot-version=v1.0 ATGCACAGGTTATCCAGGCGCTCGGCAGTCTCCTCCCTCCTCCGTGCCAAAAATGGCCTGCGTTACAGGGTCGCTGCCGCAGCTCATGTTTCTGCTTCAT CTCACCTGACTACTCCTGGTGTGGAGAGTGATGTGAACAACAAATGGTACTCCGTACTAGCTGGAGGCAGAGCAGTAGCTGGATCTGGCACTTCACTTCC GCTGCAATTGAACAATGGCGTCTTATTAGGTAGACGTTATGAGTCAACTGCAGTTGAATCGGATGCGTCGTCTCCTCCTCCGCCCGTTAGCGAGAAATAT GAGTACCAAGCTGAGGTCAGTCGTCTTATGGACCTCATTGTTAATAGCTTATACAGCAACAAAGAGGTTTTTCTTCGGGAGCTTATCAGCTATTTTGGTT TGGATTCGCAGTACTATTTATCATCATCAGCTTATTCAGCAGCTATCTATCTTGACAGTAATGCAAGTGATGCTTTGGACAAGCTGAGGTTCCTCAGTGT TACTGATCCTACACTTTCGAAGGAAAACCTTGATTTTGACATCCGCATTCATGCTGATAAAGACAATGGGATAGTGACTATCACCGATACTGGCATTGGT ATGACAAGACAAGAGCTTATTGAATGTCTTGGAACTATTGCACAGAGTGGTACAGCAAAGTTTCTCAAGGCATTGAAGGATAGCAAGGATGCTGGAGGTG ATAACAATCTAATAGGTCAATTTGGTGTGGGATTTTACTCTGCTTTCCTCGTTGCAGATCGGGTTGTTGTCTCCACCAAGAGCCCAAAATCAGATAAGCA ATATGTGTGGGAAGGAGAAGCAAATGCTAGCTCTTATACTATAAGAGAGGAAACAGAAGTAGATAAGCTTCTTCCTAGAGGAACCCGTCTTACTTTGCAT CTGAAGCGTGATGACAAAGGTTTTGCACACCCAGAGAGGATACAGAAGCTTGTCAAGAACTACTCACAGTTTGTTTCCTTCCCAATCTACACCTGGCAGG AAAAGGGATACACAAAGGAGGTGGAGGTTGATGAGGATCCAGCCGAGGCAAAAAAATATGGAGAAGAGGGGGTAACTGAGAAGAAGAAGAAAACAAAGAC GGTTGTTGAGAAATACTGGGATTGGGACCTTACTAATGAGACCCAACCAATATGGCTTCGCAATCCAAAAGAAGTTACTACAGAGGAATACAACGAATTT TACAAGAATACCTTCAATGAATACCTTGAGCCGTTGACTTCTTCTCATTTTACGACTGAGGGTGAGGTAGAGTTTAGATCTATTCTGTATGTGCCAGCTA TTTCTTCCAGCGGAAAGGATGATATTGTTAATCCCAAGACCAAGAATATAAGGCTGTATGTGAAAAGGGTTTTCATTTCCGATGACTTTGACGGAGAACT GTTTCCGAGATACTTGAGCTTTATCAAAGGTGTGGTGGATTCCAACGACCTTCCTCTCAATGTTTCAAGGGAGATTCTTCAAGAAAGTCGCATTGTGCGG ATAATGAAGAAACGGTTGGTTAAGAAAGCATTTGACATGATTTTGGGGATATCCATGAGTGACAATAGAGAAGACTATGAAAAGTTCTGGGACAACTACG GAAAACATCTTAAACTAGGATGCATTGAAGATCGTGAAAACCATAAGCGAATAGGTCCATTGCTCCGATTTTTCTCATCACAGAGTGAAGATTACATGAT TAGTCTGGATGAATACGTGGACAACATGAAACCAGATCAGAAGGATATCTATTACATTGCTTCTGACAGTGTGACAAGTGCTAAGAACACACCTTTCTTG GAAAAACTTCTTGAGAAGGAACTCGAAGTGCTCTTTTTGGTTGATCCCATCGATGAGGTTGCCGTCCAGAACTTGAAATCTTACAAGGAGAAGAATTTTA TAGATGTCAGTAAGGAAGACTTAGATATAGGTGAAAAGAATGAAGAGAAGGAGAAGGCGATGAAGCAAGAATTTGGGCAAACCTGTGACTGGATCAAAAA GCGTCTGGGAGACAAGGTTGCTAGTGTGCAAATCTCAAACCGTCTTAGCTCCTCACCTTGTGTTCTTGTATCTTCGAAATTTGGTTGGTCGGCAAACATG GAAAGATTGATGAAGTCCCAGACAATGGGTGATCCGTCAAGCTTGGAGTTTATGAAAGGCAGAAGGGTGTTCGAGATCAATCCTGAACATCCAATATTCA ACAATCTAAATGCTGCTTGCAAAGTCAACCCTGAAGACGAAGATGCACTGAGGGCCATTGATCTTCTGTACGATACAGCGTTAGTTTCAAGTGGTTACAC GCCTGACGATCCTGCCCAGCTTGGAAGCAAAATCTACGAGATGATGAACATAGCTATATCAGGTAAATGGTCCTCGCCAGCTGATGTACAGCCGCAGCAG GCTCATACATCTGCTCAGCCGCAAAACCAAGAACCTGTCGAAGCGGAGATTGTGGAGCCTGTGGAGGCTGGTAACCAAAAGTAA
AA sequence Show only first row Show all	>Lus10012329 pacid=23176782 polypeptide=Lus10012329 locus=Lus10012329.g ID=Lus10012329.BGIv1.0 annot-version=v1.0 MHRLSRRSAVSSLLRAKNGLRYRVAAAAHVSASSHLTTPGVESDVNNKWYSVLAGGRAVAGSGTSLPLQLNNGVLLGRRYESTAVESDASSPPPPVSEKY EYQAEVSRLMDLIVNSLYSNKEVFLRELISYFGLDSQYYLSSSAYSAAIYLDSNASDALDKLRFLSVTDPTLSKENLDFDIRIHADKDNGIVTITDTGIG MTRQELIECLGTIAQSGTAKFLKALKDSKDAGGDNNLIGQFGVGFYSAFLVADRVVVSTKSPKSDKQYVWEGEANASSYTIREETEVDKLLPRGTRLTLH LKRDDKGFAHPERIQKLVKNYSQFVSFPIYTWQEKGYTKEVEVDEDPAEAKKYGEEGVTEKKKKTKTVVEKYWDWDLTNETQPIWLRNPKEVTTEEYNEF YKNTFNEYLEPLTSSHFTTEGEVEFRSILYVPAISSSGKDDIVNPKTKNIRLYVKRVFISDDFDGELFPRYLSFIKGVVDSNDLPLNVSREILQESRIVR IMKKRLVKKAFDMILGISMSDNREDYEKFWDNYGKHLKLGCIEDRENHKRIGPLLRFFSSQSEDYMISLDEYVDNMKPDQKDIYYIASDSVTSAKNTPFL EKLLEKELEVLFLVDPIDEVAVQNLKSYKEKNFIDVSKEDLDIGEKNEEKEKAMKQEFGQTCDWIKKRLGDKVASVQISNRLSSSPCVLVSSKFGWSANM ERLMKSQTMGDPSSLEFMKGRRVFEINPEHPIFNNLNAACKVNPEDEDALRAIDLLYDTALVSSGYTPDDPAQLGSKIYEMMNIAISGKWSSPADVQPQQ AHTSAQPQNQEPVEAEIVEPVEAGNQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Lus10012329 [exp]	0	1
AT3G07770		Hsp89.1, AtHsp9...	HEAT SHOCK PROTEIN 90-6, HEAT ...		Lus10006374 [exp]	1.0	0.9558
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011770 [exp]	2.4	0.9030
AT1G19520		NFD5	NUCLEAR FUSION DEFECTIVE 5, pe...		Lus10030026 [exp]	4.0	0.8776
AT1G16870			mitochondrial 28S ribosomal pr...		Lus10007056 [exp]	4.2	0.8970
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Lus10031121 [exp]	9.2	0.8440
AT5G27395			Mitochondrial inner membrane t...		Lus10029978 [exp]	9.2	0.8193
AT2G37230			Tetratricopeptide repeat (TPR)...		Lus10021645 [exp]	12.7	0.8386
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10012112 [exp]	13.0	0.8401
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011902 [exp]	13.8	0.8384
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	18.2	0.8517

Compare expression of checked genes

Lus10012329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.