Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16447 39 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006375 [exp] 177 / 5e-57 ND 42 / 4e-05 Lus10043166 [exp] 43 / 2e-05 ND 40 / 6e-05 Lus10032581 [exp] 42 / 3e-05 ND 40 / 7e-05 Lus10004411 [exp] 42 / 6e-05 ND 37 / 9e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G165000 [exp] 68 / 7e-15 AT4G16447 43 / 5e-06 unknown protein Potri.001G362000 [exp] 57 / 6e-11 AT4G16447 50 / 8e-09 unknown protein Potri.016G009200 [exp] 47 / 5e-07 AT4G16447 44 / 2e-06 unknown protein Potri.011G086300 [exp] 46 / 7e-07 AT4G16447 40 / 6e-05 unknown protein Potri.006G016500 [exp] 46 / 1e-06 AT4G16447 46 / 5e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012330 pacid=23176819 polypeptide=Lus10012330 locus=Lus10012330.g ID=Lus10012330.BGIv1.0 annot-version=v1.0 ATGGGTAGGCAAACTGGTGACTCTTCTTCCACTAGGGTTAACTCCTCCATAGCTCTACTACAAGAAAGGTTCAAGGAGCTTCAAAGAGTGAAGGATAAAA GACAAGAGAAGGAGCTTCTCAAGCTTTTCTCCGACTCCTCAGAAAGGCATAGTACCGCTAGTCCATCCTCATCATCGTCACCACCACCACCTTCATCGTC TTCCTCAAAGCATTTCGAGCCTTCGTCTTCCTCAAATTTCCAAGCACCTTACGATCATGATCGAAACTCAACCTTTCTCAACCGTCGATCGACACCGCCT TTATCTCCAACATCCCCGCCTCGAGGAGTGTTGAGGTATCAAGACCCATCATCACTCCTATCTCTTGGTCTCCCCTCATATGATCATCATGATCACCAGC CCCTGATCAGGGGACCCTCTCATGTGAAGAGTAACCAAATTACAAGCCTTTGGTCAAATAGAGTTCCATCGTCACCATCATTATCTAGGACAAATTTCGG CCATTCAGATGTTGATACGTCTCTTCGCCTCTAG
AA sequence Show only first row Show all	>Lus10012330 pacid=23176819 polypeptide=Lus10012330 locus=Lus10012330.g ID=Lus10012330.BGIv1.0 annot-version=v1.0 MGRQTGDSSSTRVNSSIALLQERFKELQRVKDKRQEKELLKLFSDSSERHSTASPSSSSSPPPPSSSSSKHFEPSSSSNFQAPYDHDRNSTFLNRRSTPP LSPTSPPRGVLRYQDPSSLLSLGLPSYDHHDHQPLIRGPSHVKSNQITSLWSNRVPSSPSLSRTNFGHSDVDTSLRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012330 [exp]	0	1
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10023743 [exp]	3.5	0.8530
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	7.0	0.8660
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	8.9	0.8314
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10010129 [exp]	8.9	0.8418
AT5G27410			D-aminoacid aminotransferase-l...		Lus10035342 [exp]	9.2	0.8228
AT3G51100			unknown protein		Lus10041813 [exp]	9.2	0.8625
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10001813 [exp]	14.1	0.8165
AT1G74240			Mitochondrial substrate carrie...		Lus10017849 [exp]	18.1	0.8023
AT5G65880			unknown protein		Lus10011719 [exp]	19.0	0.8391
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10041475 [exp]	20.1	0.8126

Compare expression of checked genes

Lus10012330 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.