Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31160 1031 / 0 DCAF1 DDB1-CUL4 associated factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006376 [exp] 2135 / 0 AT4G31160 1309 / 0.0 DDB1-CUL4 associated factor 1 (.1) Lus10040495 [exp] 1835 / 0 AT4G31160 1325 / 0.0 DDB1-CUL4 associated factor 1 (.1) Lus10006377 [exp] 972 / 0 AT4G31160 484 / 1e-152 DDB1-CUL4 associated factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G280200 [exp] 2246 / 0 AT4G31160 1723 / 0.0 DDB1-CUL4 associated factor 1 (.1) Potri.006G280600 [exp] 91 / 4e-18 AT4G20325 318 / 3e-105 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012331 pacid=23176814 polypeptide=Lus10012331 locus=Lus10012331.g ID=Lus10012331.BGIv1.0 annot-version=v1.0 ATGGACGGGGAGTCGCCCAGCCCTAACGGAGAAACCTCTGCTGCTGAGGTAGCACCGACGCCGGCGGCGGTGGCTCTGCTTCCACTTCCACCTATCTCGG AAGCGGGGGATGGGGGTGAGGTGGGGCCTCAACCTCACGGGCACGGAGATGGAGACGGAGATGATGACGATGACGATGACGATGAGGAGGAAACGAAGAA GGAGGAAGATGACGAGTTGATTGACAAGGCGCAGAGGTTAATGGAAAAGATTACTGCAGCTCCTGACAACCCTAGTGCTACCGTTCTCCACGCTCTATCT TCTCTCCTCGAGACTCAGGAGTCTCTATATGTCGAAGAGAATGGACATTCTAGTGCTAATACAACTCGTGCTTCCCATAATATTGGTCGTCTTGGAAACT TAGTTCGGGACAATGATGAGTTTTTTGACTTGGTATCTTCTAAGATTCTTGCTGAGACAAGATATTCAACTGCCGTTCAGGCAGCTGCTGCGAGGCTTGT TATGAGCTGCTCGTCAACATGGACTTATCCTCATGTATTTGATGAACCCGTTGTGGAGAACATAAAGGGCTGGGTGATGGATGAAACCGTGAGATTTTCT GGTGAAGAGCGCAATTGGAAACATGGTACAAAAAGGAGAGATGCAACAGATTCTGAGATGCTGAAGGCCTATTCTACGGGGCTCCTTGCTGTATGTTTGG GGAGTGGTGGTCAGGTTGTTGAAGATGTGCTTACATCTGGATTGTCCGCAAAGCTCATGCGCTTTCTTCGAATTCGCATTCTGGGGGAAAGTAGCACAAG CCAAAAAGATGGTAGTTATTCTACAGAAGGGAAAAATGCAAATGCTTCCACATGCAACCGAAGTCGGGCACGCCAGCTTCTTGAGGCTACTCGTGATAAT TTGAAGGTGATGGATCAGAGGTCACTAGATTATCAGAGTGTTGATAGAAATGATGATAAAAGCACCGGAGAATTGCCTAATATGTTAGCTGAAGGAATTC ACCTCTGCGAAGCTGATGCTGAGGGTGGGGAGAGATGGCACAGGAAAGATCAACGTGATGGAGAGAATAAAGCCGAAGACTTCGATGAGAATGGGAGAGA TGATCTGTTGAGGCATAAGGTTTCCCGTGGATTGACAAGACTGGGAGGGAGGGGAAGAACAAATGAAGGTGTTCTAGATACTGATCAAGGTTTGACATCT CCAAGTTCTGGTAGTCGCTTTGTACATGGGAGGAATCCTAGGGACAAGGGATTAATCAGAATTTTGGATGCGAAAAAAGGATCAGAAGCAAAGAATTCTC CAGGAAGCCTAATTGCTGATGGTTTTACCTGGGAAAGAAAGGAAAACGATGACTGCCTTAGTGAATGCAGAATTGGAACTAAAGACATATCTAATTTGGT AAAAAAAGCTGTAGGAGCTGCTGAAGCGGAAGCCAGAGCTGCAAATGCACCCCCAGAAGCCATTAAGGCAGCTGGTGATGCTGCTGCTGAAGTTGTCAAG AGTGCTGCTTTTGAGGAATTTAAATCTACCAATAATGATGAGGCTGCAGTTTTGGCTGCTTCTCTTGTTGCATCTACAGTGGTCGATGCTGCAAATGCAG TTGAAGTGGCTAGGAGAACTACCAGTGACACCAATGATTCAGTGGATCTTGAAAGTACAGAGAAAAAAACGAATGAGGAAACTGAAGAATATTTCATCCC TGATGTTGAATCACTTGCAAAGTTGAGGGAAAAATATTGCATACAATGCCTTGAGATATTAGGGGAATATGTTGAAGTTCTTGGGCCTGTCTTGCATGAG AAGGGTGTAGATGTTTGTCTGTCACTGTTGGAACGCAGTTCAAAGCACAAAGGAGCATCCAAGGCTATGTCACTCTTGCCTGATGTCATGAAGCTTATAT GTGCCTTGGCTGCTCACAGGAAGTTTGCTGCACTGTTTGTGGATAGAGGTGGCATGCAAAAACTGCTTGCTGTGCCACGAGTTGAACACACCTACTTTGG TCTTTCTTCATGCTTATTTACTATAGGTTCTCTTCAGGGAATCATGGAGCGTGTATGTGCTCTTCCATCAGCTGTTGTTGAGCAGGTGGTTGGGTTAGCT ATTCAACTTTTGGAGTGCTCCCAAGATCAAGCCAGGAAAAATGCAGCCTTATTTTTTGGTGCTGCCTTTGTATTTAGAGCTGTGATTGATGCTTTTGATG CTCAAGATGGTTTGCAGAAGTCACTTAGCCTTTTAAATGAAGCTGCTTCGGTTAGATCTGGTGGCAATTCAGGGTCGTTGAACCTGTCTGGTTCTGCTGC CCTTCGTACCGATCGATCTCCATCGGAAGTGCTAACGTCATCAGAAAAACAGATAGCTTATCACACTTCTGTTGCATTGCGACAATATTTCAGAGGACAT TTTCTTCTGCTTGTGGAATCAATGCGTCCTAATAAAAACAGCCGAAGTTTGGCTAGGAACCTACCAAGTGCAAGGGCTGCATACAAGCCTCTTGACTTGA GTAATGAAGCTATGGATGCAATCTTTATGCAATTACAGAAGGATCGAAAGTTGGGTTCCACTTTTGCAAGAGCTCGTTTTCCTGCTGTCGACAAGTTCTT ACGGTTTAATGGGCATATTACTATGTTGGAATTGTGTCAGGCTCCACCCGTTGAACGGTATTTGCATGACTTGCTTCAGTATGCTCTGGGTGTCCTCCAT ATTGTCACATTGGTCAATGATGGCCGCAAAATGATAGTGAATGCTACCTTAAGCAATAATCGTGTTGGCATAGCTGTTATTCTGGATGCAGCAAATGTCA TTGGTAATTATGTGGATCCTGAGATTATACAACCAGCATTGAATGTGCTAATAAACCTTGTTTGTCCACCTCCTTCAATAAGTAACAGACCACAGTCCTC TGGTGCTGGTAATATCCAAGATCGATCTTCTAATATCCCTAGCCATGGTGATCAAAGGGAGCGGAATGGTGAGTCAAGTGCAGCCGATCGAGGAGGCCGC TCAATTGGATGTGCTATGCAAGCATCTGTTAATCCTACAGCAACGTCAGGATTGGTTGGTGATAGAACAATATCTTTAGGTTCTGGAGCAGGTTTTTCAG GACTTGCTACACAGATGGAACAGGGATATCGTCTGGCTAGAGAGGCTGTTCGTGGCAACAATGGTATAAAGGTGCTACTGCATCTCCTCCAGCCACGCAT ATATTCTCCTCCTGTTGCCCTTGATTGTATCCGTGCACTAGCTTGCCGGGTACTGCTTGGCTTAGCGAGAGATGATACAATCGCACACATATTGACCAAA CTCCAGGTTGGTAAAAAGCTATCAGAATTAATACGAGATTCAGGTGGCCAAGGCAGGTGGCAAACCGAGCTCGCTCAGTTGGCGATTGAGCTAATTGGGA TTGTGACTAATTCTGGGCGGGCAAGCACACTGGCTGGTACTTATGCTGCCACACCCACATTGCGGCGCATCGAAAGAGCTGCTATAGCAGCAGCTACTCC TATCACGTATCATTCGAGGGAACTGTTGCTCCTCATTCATGAACACCTACAAGCATCTGGTTTGGCCACAGCTGCTGATGCACTATTGAAAGACGCTCAG TTAACGCCTTTGCCATCTTCTCTTGCACCTCTAGAACCTATCCAGGAGACTCCTTTTGTGCAGATTGAGTGGCCATCTGGGCGCGCACCCAGTGGTTTTC TGTCTGAAAAATCCAAAGCAATTGTGAATGAAGATCGCAATATCAGATGTGATTTGTCTGTGTCTGCAAAAAAGAAGCCCCTTTTGTTCTCACCATCGTT TGGATCGTCTAAAAAGTCATTCAGTGGTTCAAAGCAATATCAACCTCCTTCAGATATATTGGGGAAAGAAGCCCTGTCAGAATCTGTGTCAAAGAACAAC TTTGAGAAAGAGCCTTTGTGCAAGACCCCAACTCTTCCAGCTAAACGCAAGCTATCAGATCTAAAGGATATCGGCCTGGCTTCATCTGGAAAGCGACTCA ATACTGGCGAGCACGGTTTCCGTTCTCCAGTCTTTTCCACACCGGCTAATGCTCGGAAGACTGGTGATGGTTTGACTACACCTTTCTCTTACACGAGGGA CATTCATACTAGGTCAACGCCATTCAGTGCTATAGATTATATAGATGAAAGTCCCTGCCCTAGTTCGGCACAACCCGGAGTTCTCACTGACGTTTCTAGC AACTCGGAGCGGTTAACATTAGACTCTATTGTGGTTCAGTATCTGAAGCACCAACATCGTCAGTGCCCAGCTCCTATAACAACTCTTCCACCGCTCTCCT TGCTGCAGCCACATGTTTGCCCAGAACCAAAAAGGTGCCTTGATGCACCATCAAATGTGACAGCTAGGATTGGTTCACGGGAGTTCAGAAGTTCGTATGG TGGGATTCACGGAAATCGCAAGGATCGACAATTCGTGTACAGCAGATTCAGACCATGGAGAACTTGCAGGGACGATGCTGGTGCCCTGCTAACCTGCGTG ACGTTCCTTGGCAACTCTTCTCATGTTGCAGTTGGCAGCCACAATGGGGAGGTTAAAATTTTCGATTCCAACAGCAGCAATTTGTTGGAGAGCTGCACAA CCCACCAGGCTCCTCTGACTCATGTTCAATCACATCTAGCTGGGGAGACCCAGTTGGTGCTATCTTCAAGTTCTCAGGATGTTTGTCTGTGGGATGCTTC TTCAATCTCTGGAGGTCCCATGCACACCCTGGAAGGGCGCAAAGCTGCAAGGTTCAGCAATTCTGGTGACATATTTGCGACCCTAACAACAGACGTATCG CGAAGAGAAATTCTGCTCTATGATGTCCAAACCTGCCAAGTAATCTCGACTTTGTCAGATACGAATCCAAGTTCTACAGGCAGGGGTCATGTCTATCCGC CGATACACTTTAGCCCTTGCGATACAATGCTTCTTTGGAATGGTTACGGAGTCTTGTGGGATCGACGGCAGTCTGCTCCTGTTCATCGCTTTGATCAGTT CACTGATTATGGAGGTGGTGGGTTTCATCCTGCGAGGAATGAGGTGATTATAAACTCAGAGGTTTGGGATTTGCGGAGGAAGTTCAAGCTTCTACGGAGT GTACCGTCGTTGGATCAAACGACTATAACCTTCAATGCACGAGGAGATGTGATCTATGCTATCTTGAGGAGAAACCTGGAGGACGTGATGGCTGCAGTTC ACACTCGCCGCGTGAAGCACCCACTGTTTGCAGCTTTCCGAACGGTGGACGCCATCAATTACTCGGAGATAGCAACTGTGCCGGTGGACCGCTGTGTTCT CGATTTTGCATCGGAGCCTACGGATTCGTTTCTCGGGTTGATCACCATGGATGACCAACAGGAGATGTACTCGTCGGCTAGAGTTTACGAGATTGGTAGA AGGAGGCCTACTGATGATGACTCGGATCCTGACGATGCTGATGAGGAGGACGAGGACGAAGATGATGATGACGAGGACGATGATGATGTTGATTCGATCT CGGGGCCTGATTTCGGCGGCGATGGTGAGAGTGATGCGGATGACTTGAGTGATGATGATGATTCAGATGACAATGAGGGTGATGTGGACTTCATGATGGA TGATGTGGTGTTTGGTGGAGGAGGTGGATTACTGGAGATTGTTACGGACGGAGATGATGATGATGATGACGAAGACGACAGTCAAGTGTTGGAATCATAC AGTAGTGGGGAAGAAGAGGACTTCATGGGGTGA
AA sequence Show only first row Show all	>Lus10012331 pacid=23176814 polypeptide=Lus10012331 locus=Lus10012331.g ID=Lus10012331.BGIv1.0 annot-version=v1.0 MDGESPSPNGETSAAEVAPTPAAVALLPLPPISEAGDGGEVGPQPHGHGDGDGDDDDDDDDEEETKKEEDDELIDKAQRLMEKITAAPDNPSATVLHALS SLLETQESLYVEENGHSSANTTRASHNIGRLGNLVRDNDEFFDLVSSKILAETRYSTAVQAAAARLVMSCSSTWTYPHVFDEPVVENIKGWVMDETVRFS GEERNWKHGTKRRDATDSEMLKAYSTGLLAVCLGSGGQVVEDVLTSGLSAKLMRFLRIRILGESSTSQKDGSYSTEGKNANASTCNRSRARQLLEATRDN LKVMDQRSLDYQSVDRNDDKSTGELPNMLAEGIHLCEADAEGGERWHRKDQRDGENKAEDFDENGRDDLLRHKVSRGLTRLGGRGRTNEGVLDTDQGLTS PSSGSRFVHGRNPRDKGLIRILDAKKGSEAKNSPGSLIADGFTWERKENDDCLSECRIGTKDISNLVKKAVGAAEAEARAANAPPEAIKAAGDAAAEVVK SAAFEEFKSTNNDEAAVLAASLVASTVVDAANAVEVARRTTSDTNDSVDLESTEKKTNEETEEYFIPDVESLAKLREKYCIQCLEILGEYVEVLGPVLHE KGVDVCLSLLERSSKHKGASKAMSLLPDVMKLICALAAHRKFAALFVDRGGMQKLLAVPRVEHTYFGLSSCLFTIGSLQGIMERVCALPSAVVEQVVGLA IQLLECSQDQARKNAALFFGAAFVFRAVIDAFDAQDGLQKSLSLLNEAASVRSGGNSGSLNLSGSAALRTDRSPSEVLTSSEKQIAYHTSVALRQYFRGH FLLLVESMRPNKNSRSLARNLPSARAAYKPLDLSNEAMDAIFMQLQKDRKLGSTFARARFPAVDKFLRFNGHITMLELCQAPPVERYLHDLLQYALGVLH IVTLVNDGRKMIVNATLSNNRVGIAVILDAANVIGNYVDPEIIQPALNVLINLVCPPPSISNRPQSSGAGNIQDRSSNIPSHGDQRERNGESSAADRGGR SIGCAMQASVNPTATSGLVGDRTISLGSGAGFSGLATQMEQGYRLAREAVRGNNGIKVLLHLLQPRIYSPPVALDCIRALACRVLLGLARDDTIAHILTK LQVGKKLSELIRDSGGQGRWQTELAQLAIELIGIVTNSGRASTLAGTYAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLATAADALLKDAQ LTPLPSSLAPLEPIQETPFVQIEWPSGRAPSGFLSEKSKAIVNEDRNIRCDLSVSAKKKPLLFSPSFGSSKKSFSGSKQYQPPSDILGKEALSESVSKNN FEKEPLCKTPTLPAKRKLSDLKDIGLASSGKRLNTGEHGFRSPVFSTPANARKTGDGLTTPFSYTRDIHTRSTPFSAIDYIDESPCPSSAQPGVLTDVSS NSERLTLDSIVVQYLKHQHRQCPAPITTLPPLSLLQPHVCPEPKRCLDAPSNVTARIGSREFRSSYGGIHGNRKDRQFVYSRFRPWRTCRDDAGALLTCV TFLGNSSHVAVGSHNGEVKIFDSNSSNLLESCTTHQAPLTHVQSHLAGETQLVLSSSSQDVCLWDASSISGGPMHTLEGRKAARFSNSGDIFATLTTDVS RREILLYDVQTCQVISTLSDTNPSSTGRGHVYPPIHFSPCDTMLLWNGYGVLWDRRQSAPVHRFDQFTDYGGGGFHPARNEVIINSEVWDLRRKFKLLRS VPSLDQTTITFNARGDVIYAILRRNLEDVMAAVHTRRVKHPLFAAFRTVDAINYSEIATVPVDRCVLDFASEPTDSFLGLITMDDQQEMYSSARVYEIGR RRPTDDDSDPDDADEEDEDEDDDDEDDDDVDSISGPDFGGDGESDADDLSDDDDSDDNEGDVDFMMDDVVFGGGGGLLEIVTDGDDDDDDEDDSQVLESY SSGEEEDFMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10012331 [exp]	0	1
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10006376 [exp]	1.4	0.9131
AT2G25320			TRAF-like family protein (.1)		Lus10001490 [exp]	3.0	0.9160
AT1G36990			unknown protein		Lus10042697 [exp]	4.2	0.9075
AT1G24265			Protein of unknown function (D...		Lus10003127 [exp]	7.5	0.8704
AT4G32620			Enhancer of polycomb-like tran...		Lus10041252 [exp]	9.2	0.8970
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10030005 [exp]	10.6	0.8696
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Lus10008681 [exp]	11.2	0.8786
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	12.5	0.8740
AT4G38870			F-box and associated interacti...		Lus10003705 [exp]	14.0	0.8701
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	15.3	0.8723

Compare expression of checked genes

Lus10012331 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.