Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05170 1162 / 0 ATVPS11 vacuolar protein sorting 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006378 [exp] 1490 / 0 AT2G05170 1560 / 0.0 vacuolar protein sorting 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G165400 [exp] 1286 / 0 AT2G05170 1552 / 0.0 vacuolar protein sorting 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00637 [flax] [poplar] Clathrin Region in Clathrin and VPS CL0020 [flax] [poplar] PF12451 [flax] [poplar] VPS11_C Vacuolar protein sorting protein 11 C terminal
Representative CDS sequence Show only first row Show all	>Lus10012332 pacid=23176751 polypeptide=Lus10012332 locus=Lus10012332.g ID=Lus10012332.BGIv1.0 annot-version=v1.0 ATGTACCAGTGGAGGAAATTCGACTTCTTCGAGGAGAAGTACGGCGGAAAGAGCTCGATCCCGGAGGAAGTTAGTGGGGAGATCGAGTGCTGCTCCAGCG GCAGAGGCAAGGTTGTGATCGGCTGCGACGATGGCACCGTCAGCTTCCTTGATCGTGGCCTCAACTTCAATTCCGGATTCCAAGCTCACTCTTCCTCCAT TCTTTTCCTCCAGCAGCTCAAGCAACGGAACTTCCTTCTAACGGTTGGGGAAGATGAGCAGTTGTCTTCACAGCAATCGTCCATGTGCCTGAAGGTCTTT GACCTCGATAGGCCACAAACTGAGGGAGCTAGTAGTTCAGCTACCACCCCTGATTCCATTGGCATATTGCGCATTTTCACCAATCAATTCCCTGAAGCGA AGATTACTTCGTTTTTAGTACTTGAAGAGGCGCCTCCAATACTACTGATAGCTATTGGATTAGACAATGGTTGCATTTACTGCATCAAGGGAGACATTGC AAGAGAGCGTATACAGCGGTTTATGCTGCAGGTAGATAATGCTTCTTCAGACCGAAGCCAATCATCTGTCACTGGTCTTGGGTTTAGAGTGGACGGCCAG ACCCTTCAATTATTTGCTGTAACTCCTGGTTCTGTGAGTCTGTTCAGCTTGCATAATCAACCACCGAGGCGGCAGACCCTCGATCAGATTGGTTCCAGTG TAAATAGCGTTGCAATGAGTGATCGATCAGAGCTAATCATTGGTAGACCTGAGGCTGTTTATTTCTATGAGGTTGATGGGCGTGGTCCTTGTTGGGCATT CGAGGGGGAGAAGAAATTCGTAGGTTGGTTCCGTGGTTACCTTTTGTGTGTAATATCTGACCAGAGGAGTGGCAAGGATAGTTTCAATGTTTATGATCTG AAGAACCGGTTAATAGCCCACAGTATAGTGGTGAAAGAAGTTTCTCAAATGCTTTGTGAGTGGGGTAATATTATACTTATCATGAGTGACAAATCAGCAT TGTGTATTGGTGAGAAAGACATGGAAAGCAAGTTAGACATGCTTTTCAAGAAAAATCTGTATACTGTGGCCATCAATCTGGTTCAGAGCCAGCAGGCTGA TGCTGCTGCAACTGCTGAAGTTCTTAGAAAGTATGGAGATCATCTCTATAGCAAGCAAGATTATGACGAGGCTATGACTCAGTACATCAGTACTATTGGT CACCTTGAGCCTTCATATGTGATACAGAAGTTCCTGGATGCACAGAGAATATACAACCTTACAAATTATTTGGAGAATTTGCATGAGAAGGGGCTTGCTT CAAAAGACCATACAACTCTGCTCTTAAATTGTTATACTAAATTGAAAGATGTTGAGAAGCTGAATGTTTTTATCAAGAATGAGGATGCTGTGGGGGAGCA CAAGTTTGACGTGGAGACGGCTATACGGGTTTGCCGTGCTGCCAATTACCACGAGCATGCAATGTATGTTGCTAAAAAGGCTGGAAGACATGAATGGTAC TTAAAGATCTTACTCGAGGACCTAGGCAGATATGATGAAGCCTTGCAATACATTTGTAGCCTCGAATCTAGTCAGGCTGGTGTCACAGTAAAAGAATACG GTAAAATTCTTCTGGAGCACAAACCAGTTGAAACTATTCAGATACTCATGAGGCTTTGCACCGAAGATGAATCAGTAGACAAGGGAACATCAAGTAGTGG ATACTTATCTATGCTGCCATCTCCTGTTGATTTCCTGAACATTTTCATCCATTATCCTCAGTCCCTGATGGTCTTTCTTGAAAAATATACTGACAAGGTG AAGGATTCTCCTGCCCAAGTTGAAATCCATAACACTCTTTTAGAGTTGTACCTTTCCAATGATCTGGACTTTCCTGCAATGTCACAAGCTAGTAATGGTG TAGATCTTCCACTTGAATCTAGATCAGGGCCTGCTACGATTTCAACTAAACCCAATGGCAGATCAACTGGTAGTGATAAAGACAGTTCTGCAGAAAAAGA TCGTACAGAAAGGCGTCAGAAGGGCTTGCTCTTGCTCAAGAGTGCATGGCCATCTGACCAGGAGCAACCACTTTATGATGTCGATCTTGCTATAATTCTT TGTGAGATGAATGGATTTACAGAAGGGCTTTTGTATCTCTATGAGAAAATGAAACTCTATAAGGAGGTCATTGCCTGCTATATGCAGGCTCATGACCACG AAGGATTGATTGCATGCTGCAAAAAGCTGGGTGACCGCCGAGCTAGTGAGAAGTATCAGGATGAGACAACAGCGATGAGAAAAGAAATTCAAGATCTGAG GACAAATGCCAGGATATTCCAGCTGAGCAAGTGCACTGCTTGCACTTTCACCCTTGATCTTCCTGCTGTCCACTTTATGTGCATGCACTCTTTCCATCAG CGTTGCCTTGGGGATAACGAGAAAGAATGCCCTGAATGTGCTCCTGAGTACAGATCTGTCCTTGAGATGAAGAGAAACCGGGAGCAGAACTCCAACGACC AGGACCAGTTTTTCCAACAGGTGAAGAGCTCCGATGATGGCTTTTCTGTAATTGCCGAGTACTTCGGGAAGGGGATTATTAGCAAAACCAGCAACGGAGC CACTGCAGCAACTCTTGGATCAGCCAGCACATCTACTGGAAATGGGTTCTAG
AA sequence Show only first row Show all	>Lus10012332 pacid=23176751 polypeptide=Lus10012332 locus=Lus10012332.g ID=Lus10012332.BGIv1.0 annot-version=v1.0 MYQWRKFDFFEEKYGGKSSIPEEVSGEIECCSSGRGKVVIGCDDGTVSFLDRGLNFNSGFQAHSSSILFLQQLKQRNFLLTVGEDEQLSSQQSSMCLKVF DLDRPQTEGASSSATTPDSIGILRIFTNQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERIQRFMLQVDNASSDRSQSSVTGLGFRVDGQ TLQLFAVTPGSVSLFSLHNQPPRRQTLDQIGSSVNSVAMSDRSELIIGRPEAVYFYEVDGRGPCWAFEGEKKFVGWFRGYLLCVISDQRSGKDSFNVYDL KNRLIAHSIVVKEVSQMLCEWGNIILIMSDKSALCIGEKDMESKLDMLFKKNLYTVAINLVQSQQADAAATAEVLRKYGDHLYSKQDYDEAMTQYISTIG HLEPSYVIQKFLDAQRIYNLTNYLENLHEKGLASKDHTTLLLNCYTKLKDVEKLNVFIKNEDAVGEHKFDVETAIRVCRAANYHEHAMYVAKKAGRHEWY LKILLEDLGRYDEALQYICSLESSQAGVTVKEYGKILLEHKPVETIQILMRLCTEDESVDKGTSSSGYLSMLPSPVDFLNIFIHYPQSLMVFLEKYTDKV KDSPAQVEIHNTLLELYLSNDLDFPAMSQASNGVDLPLESRSGPATISTKPNGRSTGSDKDSSAEKDRTERRQKGLLLLKSAWPSDQEQPLYDVDLAIIL CEMNGFTEGLLYLYEKMKLYKEVIACYMQAHDHEGLIACCKKLGDRRASEKYQDETTAMRKEIQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHQ RCLGDNEKECPECAPEYRSVLEMKRNREQNSNDQDQFFQQVKSSDDGFSVIAEYFGKGIISKTSNGATAATLGSASTSTGNGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10012332 [exp]	0	1
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10036002 [exp]	2.0	0.9095
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10033706 [exp]	2.8	0.8855
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10041124 [exp]	2.8	0.8703
AT5G53480			ARM repeat superfamily protein...		Lus10023247 [exp]	3.5	0.9098
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10017490 [exp]	4.2	0.8992
AT2G40980			Protein kinase superfamily pro...		Lus10031009 [exp]	6.7	0.8651
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10016706 [exp]	6.9	0.8717
AT5G05520			Outer membrane OMP85 family pr...		Lus10009835 [exp]	8.4	0.8715
AT1G51350			ARM repeat superfamily protein...		Lus10027364 [exp]	12.0	0.8620
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10031634 [exp]	13.4	0.8405

Compare expression of checked genes

Lus10012332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.