Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05230 391 / 2e-125 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 391 / 2e-125 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G35753 378 / 8e-122 Domain of unknown function (DUF3444) (.1) AT5G53150 247 / 3e-71 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G25560 174 / 7e-46 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G50115 159 / 1e-41 unknown protein AT5G18750 150 / 4e-37 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18740 135 / 1e-33 Domain of unknown function (DUF3444) (.1) AT5G37440 130 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) AT5G37380 130 / 3e-32 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006380 [exp] 1377 / 0 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10001744 [exp] 371 / 9e-121 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 331 / 5e-106 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 253 / 8e-74 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10038816 [exp] 252 / 2e-73 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 222 / 3e-62 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 207 / 9e-57 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10039019 [exp] 166 / 1e-43 AT2G35540 380 / 7e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10027316 [exp] 158 / 9e-41 AT2G35540 383 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G165600 [exp] 509 / 4e-171 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.002G221000 [exp] 481 / 3e-160 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 270 / 2e-79 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 269 / 8e-79 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 266 / 1e-77 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 263 / 1e-76 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G020200 [exp] 262 / 1e-76 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 259 / 7e-75 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 170 / 1e-43 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 163 / 2e-41 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10012334 pacid=23176772 polypeptide=Lus10012334 locus=Lus10012334.g ID=Lus10012334.BGIv1.0 annot-version=v1.0 ATGGAACCAAACATAGCAGAGGCCATCACAGCAAAGGAGATCGCCGAGAGGAGATTTGCTGCCAAGGATTTCGTTGGAGCCAAGACTTATGCTTTGAAGG CTAAATCTCTGTGTCCTGGACTGGAAGGTTTATCTCAGATGGTTGCCACTTTCCAAGTCTATATGGCCTCTGAGGTAAAATCCAACGGTGAAATTGACTA TTACTCGGTTCTCGGGTTGAACCCTACTGGAGATAGAGATGCTGTTAAAAAGCAGTATAGGAAGATGGCCGTGTTGCTGCACCCGGACAAGAACAAAACT TCCGGCGCTGATGGTGCTTTCAAACTCGTATCCGAAGCGTGGACCGTGCTGTCGGATACTCTCAAAAGAAAAAAGCAGTACTCATCAATGCTTACGCCTG GAGTTGTTGCGGGATATAGCAGTTGTTCCGGTGCAGGATCAGCATCAGCTTCACACGGGCTCGATAGTTTCTGGACTGTCTGCACCTCTTGTCAAGTTCG GTACGAGTACTTGCGCAAGTACGTGAACAAGCGCCTTTCGTGCAAGAACTGCCGAGGTACTTTCATTGCTGTGGAGACTGGGACGGCTCCGGTAACTGGT TCTTTCCCATATAGTTCTTGGTCTTATCTGCGTGGAAACGGTTACGGAAGTCATGGATATGGTGGAGTTTCGTATGGAGGCTCGGGATTACACACTACTA CTCATGCGTACGAGTATGCTTCGAATGATGTATCGTCGTTTCACTGGGGATCTTACTCCGGAACTTCCAGTTTCTTGTGTCCTAATACTGAAACTTTTAA TAAGGTCAACGGAAAAGTCCGTACTGGAAGAAAAGTCAAATCAGCTTCGAAGGAAAAACCATCCCCTAAACCTGCTGTGTTTAGTGTGAGCACAATACCG GCAGCCAAGCAAGTCGTAACCTATCTCACGAAGGCCGGTAAACCCGACAAGAGGAGGAAGATTGTCGTTGGAGCGAATTTTCGAAATGAATATGATCCCT TGAACACGGGAAACGGAGTCTCTCATGCGCATGAGTATGCTCCGAGTAATGTATCGCCTTTTCAGTGGGGATCTTACTCCGGAACTTCTAATGGAGCATC TGCTGAAACTTTTAATCAGGACAACGGAGAACTCCGTAATGGAAGAAAAGTCAAATTAGCTTCCAAGGAAAAACCATCCCCTAAACCTGCCGTGTCGAAT GGCAGCACAATGCCTGAAGCCAAGAAAGTCGTAAGCTATCTTACAAAGGCTGGTAAACCCGATAAGAGGAGGAAATTTGGTCTTGGTGCGAATTTTCGAA ATGGATATGAAGAAGTGCAGCGCAAACCTCAGTCAGCAGCAGTAGGAGTTTCTGATGTACCTGTAAAAGCTGACCTTGAACCACCCAAGCTTTCCGGTCC GGTTGAAGTCACAACTAAGCGCTGGCCGATTCCTCCTCCTTTCGATCTTCGCAAGTTTTTGATCGAGAAGGCAAGGAGCGATATCAAGATCAGGCTGGAA CAAATGGAGCCAGCAAGGCAATCAGTACAGGTTGCTGCTGCTGTACCTAAAGCAGATTCGGAAATGTCTGGTCGAGTAAGCAAGCAACATATAACAGGAC CGGTTTCGATAACTGTGCCTGATCCGGACTTCCATGATTTCGACAAAGACAGATCGGAGGAATGTTTCACCCCTAAGCAGATATGGGCATTGTACGACGA AGATGATGGCATGCCACGGCTTTACTGTTTGATCCGGGAGGTGGTCTCTGTCAAGCCTTTTAAGATCCTAATCACGTATTTGAACTCGAAAACCGACACA GAGTTCGGTTCGATGAACTGGATCGGCCACGGGTTCACCAAATCCTGCGGACACTTCAGGGCGTGGAGTTCCGACACTGTCGATCAAGTGAATGTCTTTT CTCATCTTCTGAAAGGCCAGAAGGCCGGCAGGGGTGGTTGTGTAAGAATATTTCCGAGATGCGGGGAGATATGGGCGGTTTATCGGAACTGGTCTCCAGA TTGGAACGGTTCGACACCGGATGATGTGAGGCACCGGTACGAGATGGTGGAAGTGGTGGACGATTATTTCGAGGACAGAGGGGTTTGCGTCGCTCCCCTT TTGAAGATGGCCGGTTTCAAGACGGTGTATCAACGGGACTCGAGCCAGGACGCGATGAAATGGATCCCGAGGGCTGAGATGTTTCGGTTTTCGCACCAGG TTCCGTCTTGGTCCCTTAATGGGAGAGCGAACAATGATCTGCCGAATAATTGTTGGGATCTCGACCCGGCTGCCACTCCTGATGATCTGCTCCATACTGC AACAATAACAACAGAAGAAGTAAAAGCTTAG
AA sequence Show only first row Show all	>Lus10012334 pacid=23176772 polypeptide=Lus10012334 locus=Lus10012334.g ID=Lus10012334.BGIv1.0 annot-version=v1.0 MEPNIAEAITAKEIAERRFAAKDFVGAKTYALKAKSLCPGLEGLSQMVATFQVYMASEVKSNGEIDYYSVLGLNPTGDRDAVKKQYRKMAVLLHPDKNKT SGADGAFKLVSEAWTVLSDTLKRKKQYSSMLTPGVVAGYSSCSGAGSASASHGLDSFWTVCTSCQVRYEYLRKYVNKRLSCKNCRGTFIAVETGTAPVTG SFPYSSWSYLRGNGYGSHGYGGVSYGGSGLHTTTHAYEYASNDVSSFHWGSYSGTSSFLCPNTETFNKVNGKVRTGRKVKSASKEKPSPKPAVFSVSTIP AAKQVVTYLTKAGKPDKRRKIVVGANFRNEYDPLNTGNGVSHAHEYAPSNVSPFQWGSYSGTSNGASAETFNQDNGELRNGRKVKLASKEKPSPKPAVSN GSTMPEAKKVVSYLTKAGKPDKRRKFGLGANFRNGYEEVQRKPQSAAVGVSDVPVKADLEPPKLSGPVEVTTKRWPIPPPFDLRKFLIEKARSDIKIRLE QMEPARQSVQVAAAVPKADSEMSGRVSKQHITGPVSITVPDPDFHDFDKDRSEECFTPKQIWALYDEDDGMPRLYCLIREVVSVKPFKILITYLNSKTDT EFGSMNWIGHGFTKSCGHFRAWSSDTVDQVNVFSHLLKGQKAGRGGCVRIFPRCGEIWAVYRNWSPDWNGSTPDDVRHRYEMVEVVDDYFEDRGVCVAPL LKMAGFKTVYQRDSSQDAMKWIPRAEMFRFSHQVPSWSLNGRANNDLPNNCWDLDPAATPDDLLHTATITTEEVKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35753			Domain of unknown function (DU...		Lus10012334 [exp]	0	1
AT5G35753			Domain of unknown function (DU...		Lus10006380 [exp]	2.4	0.9117
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10015002 [exp]	3.9	0.8798
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10019763 [exp]	4.2	0.8478
AT4G38870			F-box and associated interacti...		Lus10003705 [exp]	4.2	0.8852
AT2G24530			unknown protein		Lus10020146 [exp]	6.7	0.8667
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	10.0	0.8650
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	10.8	0.8810
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	13.3	0.8954
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10019481 [exp]	17.0	0.8527
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10009558 [exp]	17.4	0.8107

Compare expression of checked genes

Lus10012334 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.