Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48170 138 / 3e-42 SNE, SLY2 SNEEZY, SLEEPY2, F-box family protein (.1) AT4G24210 66 / 2e-14 SLY1 SLEEPY1, F-box family protein (.1) AT5G44220 46 / 2e-06 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006381 [exp] 256 / 9e-89 AT5G48170 140 / 5e-43 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10001172 [exp] 160 / 6e-51 AT5G48170 164 / 2e-52 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10001745 [exp] 117 / 1e-33 AT5G48170 114 / 1e-32 SNEEZY, SLEEPY2, F-box family protein (.1) Lus10042637 [exp] 61 / 5e-12 AT4G24210 186 / 6e-61 SLEEPY1, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G165700 [exp] 150 / 4e-47 AT5G48170 144 / 9e-45 SNEEZY, SLEEPY2, F-box family protein (.1) Potri.002G122300 [exp] 66 / 6e-14 AT4G24210 185 / 2e-60 SLEEPY1, F-box family protein (.1) Potri.014G022100 [exp] 64 / 4e-13 AT4G24210 182 / 1e-59 SLEEPY1, F-box family protein (.1) Potri.002G054500 [exp] 47 / 2e-06 AT2G27310 122 / 2e-31 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10012335 pacid=23176747 polypeptide=Lus10012335 locus=Lus10012335.g ID=Lus10012335.BGIv1.0 annot-version=v1.0 ATGCCGACAGCTAGGCGGCAGCGGCGGTGGAGACAGGAAAACCAAGATACCTATGGTGTCATCAGCAACATCAACGACCACGTGGACATCCTAACCGAGG TGCTGAAGCGGCTCGACTGGCGGTCTCTGTCCTCGGCCGCCTGCGTCTGCCGCCTGTGGAGCAGCATTGTCCGCAACGACGACGCGCTCTGGGAAGAGCT CTGCTTCCGACACGTGTCTCCCCGGCCGTCGCCCTGGGTGCTGAGGCCCGTGGTGGGTGCTCTGGGAGGATACAAGCAGCTTTACATGGTCTACATACGG CCCGTAGTGTTCAGGGTTGGATCGGTGGAGCGGCGGGTTTGGACCGCCGACGAGGTCCAGCTCTACTTGTCTTTGTTCTGCGTTGATTACTACGAGAGGC TCGCCGGCGGCGGCGTAATTGGTGGGACCGAGTCGTCGTCTTCGTCCCTCGCGTTCCTGCTGTCCAGTCCTGTCAACGTTTGA
AA sequence Show only first row Show all	>Lus10012335 pacid=23176747 polypeptide=Lus10012335 locus=Lus10012335.g ID=Lus10012335.BGIv1.0 annot-version=v1.0 MPTARRQRRWRQENQDTYGVISNINDHVDILTEVLKRLDWRSLSSAACVCRLWSSIVRNDDALWEELCFRHVSPRPSPWVLRPVVGALGGYKQLYMVYIR PVVFRVGSVERRVWTADEVQLYLSLFCVDYYERLAGGGVIGGTESSSSSLAFLLSSPVNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48170		SNE, SLY2	SNEEZY, SLEEPY2, F-box family ...		Lus10012335 [exp]	0	1
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10004624 [exp]	7.3	0.8274
AT4G32000			Protein kinase superfamily pro...		Lus10002328 [exp]	9.8	0.9024
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10026114 [exp]	11.0	0.8874
AT4G35240			Protein of unknown function (D...		Lus10025077 [exp]	17.3	0.8833
AT2G38720		MAP65-5	microtubule-associated protein...		Lus10008705 [exp]	20.6	0.8835
AT2G45260			Plant protein of unknown funct...		Lus10008587 [exp]	25.9	0.8815
AT5G51560			Leucine-rich repeat protein ki...		Lus10031703 [exp]	28.1	0.8814
AT2G28490			RmlC-like cupins superfamily p...		Lus10011364 [exp]	31.7	0.8688
AT5G61120			unknown protein		Lus10035396 [exp]	32.8	0.8649
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	34.7	0.8740

Compare expression of checked genes

Lus10012335 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.