Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07750 323 / 3e-111 3'-5'-exoribonuclease family protein (.1.2) AT3G60500 54 / 5e-08 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) AT3G12990 51 / 3e-07 RRP45A ribonuclease PH45A (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006382 [exp] 392 / 4e-138 AT3G07750 332 / 1e-114 3'-5'-exoribonuclease family protein (.1.2) Lus10001173 [exp] 369 / 3e-129 AT3G07750 466 / 6e-168 3'-5'-exoribonuclease family protein (.1.2) Lus10001747 [exp] 368 / 1e-128 AT3G07750 462 / 2e-166 3'-5'-exoribonuclease family protein (.1.2) Lus10009708 [exp] 61 / 3e-10 AT3G60500 476 / 3e-166 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Lus10036022 [exp] 48 / 5e-06 AT3G60500 439 / 4e-150 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G166200 [exp] 363 / 7e-127 AT3G07750 422 / 3e-150 3'-5'-exoribonuclease family protein (.1.2) Potri.009G047500 [exp] 71 / 1e-13 AT3G60500 548 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3) Potri.001G253200 [exp] 69 / 5e-13 AT3G60500 526 / 0.0 ECERIFERUM 7, 3'-5'-exoribonuclease family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1 CL0329 [flax] [poplar] PF03725 [flax] [poplar] RNase_PH_C 3' exoribonuclease family, domain 2
Representative CDS sequence Show only first row Show all	>Lus10012336 pacid=23176757 polypeptide=Lus10012336 locus=Lus10012336.g ID=Lus10012336.BGIv1.0 annot-version=v1.0 ATGCTTGGACTTTCGCTGGGAGAGAAACATTTCATTGCAGGCGGGATAGATCACAACATCCGTGGTGATGGCCAGGAAAGAGACTCTTACAGACCGATTC TCATCCAGACCAATGTCATCCTTCAGGGAAATGACTCGGCGCGGGTCAGGATGGGGGCAACAGAAGTTATTGCCAGCGTAAAGGTTATACAGACAGGTAT GATAAGTGGTTACATTGTGCAGGCAGAGCTTGGAAAGCCAAGTGCTTTGCATCCTGACAAGGGGAAAGTTGTCATACATGTAGATTGCAGTGCCGTTTCT GAACCTACATTTGAGGGAAGGGGAGGTGAGGACTTATCTGCCGAACGTTCAGTTGCTCTCCAACGATGCCTCTTAGGTGGCACCGGTGGAGCAGGTGCAG GAATTGATTTGACATCCTCGATAGTAGCAGAAGGAAGATTTGTTGGGATCTCTACATCGATGGGCTCGTCATTAGTTCCGAGGGGAATCTACTCGATGCG CTGGGCTGCATTGGCTAATACCGCCATCCCAAGAGTCAGTGTCTCAGCTGCTGCATCAGGAGGCGAGCAGCCAGAAGTGGATATAAGTGAGGACGAGTTT CTGCAGTTTGATACTTCTGGAGTCCCCGTGATACTCACGCTAACAAAGGTAGGAAAGCACTATATTGTGGATGCAACATCAGATGAGGAATCCCAGATGA GCTCAGCTGTTTCTGTTTCGGTCGATAGGAAAGGGCACATCTGTGGGCTGACCAAACGAGGAGGTATAGGCCTTGATCCAAGTGTTATTTCTGATATGAT TTCTTTCGCGCAACGCTCGAGCGAACAGCTAATGACCGAGTTGGATTTCGCAATGTCGGCTGCGGAGGCCGAAGTAGACGAATCGTGGGGTTATTAG
AA sequence Show only first row Show all	>Lus10012336 pacid=23176757 polypeptide=Lus10012336 locus=Lus10012336.g ID=Lus10012336.BGIv1.0 annot-version=v1.0 MLGLSLGEKHFIAGGIDHNIRGDGQERDSYRPILIQTNVILQGNDSARVRMGATEVIASVKVIQTGMISGYIVQAELGKPSALHPDKGKVVIHVDCSAVS EPTFEGRGGEDLSAERSVALQRCLLGGTGGAGAGIDLTSSIVAEGRFVGISTSMGSSLVPRGIYSMRWAALANTAIPRVSVSAAASGGEQPEVDISEDEF LQFDTSGVPVILTLTKVGKHYIVDATSDEESQMSSAVSVSVDRKGHICGLTKRGGIGLDPSVISDMISFAQRSSEQLMTELDFAMSAAEAEVDESWGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07750			3'-5'-exoribonuclease family p...		Lus10012336 [exp]	0	1
AT1G16290			unknown protein		Lus10036958 [exp]	1.4	0.9656
AT1G05950			unknown protein		Lus10005129 [exp]	5.2	0.8915
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Lus10003122 [exp]	9.1	0.8499
AT1G37140		MCT1	MEI2 C-terminal RRM only like ...		Lus10018194 [exp]	9.3	0.9507
AT1G52290		AtPERK15	proline-rich extensin-like rec...		Lus10023581 [exp]	10.5	0.9183
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Lus10043291 [exp]	13.1	0.9254
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10027123 [exp]	17.2	0.9226
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10031672 [exp]	21.8	0.9183
AT3G15650			alpha/beta-Hydrolases superfam...		Lus10002034 [exp]	21.9	0.8455
AT2G42840		PDF1	protodermal factor 1 (.1)		Lus10007351 [exp]	26.6	0.9142

Compare expression of checked genes

Lus10012336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.