Plant FIBer expression Database

Lus10012337 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G07740 63 / 1e-12 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4)
AT4G16420 50 / 6e-08 PRZ1, ADA2B PROPORZ1, homolog of yeast ADA2 2B (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006383
[exp]
191 / 5e-59 AT3G07740 581 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4)
Lus10017553
[exp]
49 / 1e-07 AT3G07740 625 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4)
Lus10000540
[exp]
39 / 0.0005 AT3G07740 499 / 2e-174 homolog of yeast ADA2 2A (.1.2.3.4)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G166300
[exp]
81 / 9e-19 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4)
Potri.016G007600
[exp]
46 / 1e-06 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3)
Potri.006G017300
[exp]
44 / 1e-05 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3)
PFAM info
Representative CDS sequence
>Lus10012337 pacid=23176806 polypeptide=Lus10012337 locus=Lus10012337.g ID=Lus10012337.BGIv1.0 annot-version=v1.0
ATGAAGGAAGTCGAAGAGAGAGCGAAGGGAACCACACAAGGCGCTCCAAGTGGGAAAGGGCTGCTAAAGTCAAGCGATCAACTCAAGGCAGAAGTTGATG
GCAACAGTAGCAGCCCTCAAGGAGGAGCCGGTAAGAGTCCAACTGGCTCTCAACAAGTCATCCCAGATGTAGTGAACAAATGGGATATCACTGGGTTCCC
AGGAGCCAATTTGCTGTCTGAACCTGAGAAGCAACTGTGTGACCAAATGAGAATACTGCCAACACACTATCTGAAAATGCTTCAGATAATATCAACAGAG
GTGCGGAATCGGGAGTGTCTTTTAAGAAGAAAGCTGACGCGCACAGCTTATTCAAGGTGGAACCTAGCAAGATGA
AA sequence
>Lus10012337 pacid=23176806 polypeptide=Lus10012337 locus=Lus10012337.g ID=Lus10012337.BGIv1.0 annot-version=v1.0
MKEVEERAKGTTQGAPSGKGLLKSSDQLKAEVDGNSSSPQGGAGKSPTGSQQVIPDVVNKWDITGFPGANLLSEPEKQLCDQMRILPTHYLKMLQIISTE
VRNRECLLRRKLTRTAYSRWNLAR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G07740 HXA2, HXA02, HA... homolog of yeast ADA2 2A (.1.2... Lus10012337
[exp]
0 1
AT4G01830 ABCB5, PGP5 ATP-binding cassette B5, P-gly... Lus10004529
[exp]
2.6 1.0000
Lus10011759
[exp]
3.5 1.0000
AT2G20420 ATP citrate lyase (ACL) family... Lus10024923
[exp]
4.6 1.0000
AT4G00750 S-adenosyl-L-methionine-depend... Lus10027433
[exp]
5.3 1.0000
Lus10013545
[exp]
5.9 1.0000
AT4G24975 Plant self-incompatibility pro... Lus10032383
[exp]
6.5 1.0000
Lus10017303
[exp]
7.0 1.0000
AT3G50440 ATMES10 ARABIDOPSIS THALIANA METHYL ES... Lus10038486
[exp]
8.0 1.0000
AT2G20370 AtMUR3, MUR3, K... MURUS 3, KATAMARI 1, Exostosin... Lus10040003
[exp]
11.6 1.0000
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Lus10010756
[exp]
12.0 1.0000

Lus10012337 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.