Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006385 [exp] 96 / 2e-26 AT5G35770 48 / 2e-07 STERILE APETALA, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G166400 [exp] 63 / 2e-12 AT5G35770 484 / 1e-169 STERILE APETALA, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012338 pacid=23176800 polypeptide=Lus10012338 locus=Lus10012338.g ID=Lus10012338.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCTCTTCCTCCTCTCCCGTCTTCTTCTTCTTCTTCGTCTTCTTCCTCCTCCGGCAACGACAATAACGACGGCAGACTAGTTGTCGGTTCCT CCGCCGGAACAGGACATGATTACGAAGGGCCATCGAGGTCCAGGCCACGCGGCGTTTATGAAGTGTGGCCGGAGCCTTTTTTGGAAGCCCTCGCTACCCA TATCGCCGCCGACGCTGCTCTCTTCTCCGGCCGCCTCTCCGCCGCTCAGGCTCTCTCCAATGTCTTCCAGTTCTTAAGCTGTCAGTTCAATTTTATTTTG GGAAGAGGAGAAATTGATGATGATTTAACAGAGCCTGGTGTCTTACTACTACGGATTTATAGTTCTGACCATGACTTTTCAAGTGGTCAACAGCTGTGCT GTGGTTGCAGTTTAAAGGGAGGGAGAAACTGA
AA sequence Show only first row Show all	>Lus10012338 pacid=23176800 polypeptide=Lus10012338 locus=Lus10012338.g ID=Lus10012338.BGIv1.0 annot-version=v1.0 MSSSLPPLPSSSSSSSSSSSGNDNNDGRLVVGSSAGTGHDYEGPSRSRPRGVYEVWPEPFLEALATHIAADAALFSGRLSAAQALSNVFQFLSCQFNFIL GRGEIDDDLTEPGVLLLRIYSSDHDFSSGQQLCCGCSLKGGRN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35770		SAP	STERILE APETALA, Transducin/WD...		Lus10012338 [exp]	0	1
					Lus10041871 [exp]	8.5	0.9442
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10002046 [exp]	11.9	0.9438
AT5G01660			unknown protein		Lus10018307 [exp]	17.0	0.9396
AT2G28790			Pathogenesis-related thaumatin...		Lus10005453 [exp]	21.1	0.9390
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10041909 [exp]	21.4	0.9416
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10001238 [exp]	27.1	0.9248
AT1G55580	GRAS	SCL18, LAS	SCARECROW-LIKE 18, Lateral Sup...		Lus10032882 [exp]	28.8	0.9377
					Lus10002045 [exp]	33.0	0.9323
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	33.2	0.9376
					Lus10026293 [exp]	36.7	0.9365

Compare expression of checked genes

Lus10012338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.