Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35790 179 / 6e-55 G6PD1 glucose-6-phosphate dehydrogenase 1 (.1) AT1G24280 175 / 2e-53 G6PD3 glucose-6-phosphate dehydrogenase 3 (.1) AT5G13110 173 / 1e-52 G6PD2 glucose-6-phosphate dehydrogenase 2 (.1) AT1G09420 112 / 2e-30 G6PD4 glucose-6-phosphate dehydrogenase 4 (.1.2) AT3G27300 79 / 1e-18 G6PD5 glucose-6-phosphate dehydrogenase 5 (.1.2.3) AT5G40760 72 / 3e-16 G6PD6 glucose-6-phosphate dehydrogenase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006386 [exp] 197 / 1e-61 AT5G35790 904 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Lus10003134 [exp] 172 / 3e-52 AT5G13110 973 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10011340 [exp] 172 / 4e-52 AT5G13110 967 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Lus10032079 [exp] 78 / 3e-18 AT5G40760 873 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10014615 [exp] 78 / 5e-18 AT5G40760 905 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Lus10014614 [exp] 77 / 6e-18 AT5G40760 782 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G166800 [exp] 185 / 3e-57 AT5G35790 931 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1) Potri.003G168000 [exp] 174 / 4e-53 AT5G13110 950 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.001G059900 [exp] 168 / 1e-50 AT5G13110 956 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1) Potri.013G005200 [exp] 117 / 3e-32 AT1G09420 815 / 0.0 glucose-6-phosphate dehydrogenase 4 (.1.2) Potri.017G070200 [exp] 82 / 1e-19 AT5G40760 902 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1) Potri.001G337400 [exp] 81 / 3e-19 AT5G40760 910 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02781 [flax] [poplar] G6PD_C Glucose-6-phosphate dehydrogenase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012339 pacid=23176762 polypeptide=Lus10012339 locus=Lus10012339.g ID=Lus10012339.BGIv1.0 annot-version=v1.0 ATGAGACTTGACCGCAGTGACCTCAATCTGCTGTATAAGGCCAGGTATCCAAGAGAAATCCCAGATGCTTACGAGAGGCTGCTGCTGGACGCCATAGAAG GAGAAAGGAGGTTGTTTATAAGGAGTGACGAGCTTGATGCTGCGTGGGCACTGTTTACGCCGTTGTTGAAGGAACTTGAGGAGAAGAAAATAGTGCCGGA GCTGTATCCTTACGGTAGCAGAGGTCCAGTTGGTGCACATTATCTTGCTGCTAAACATAATGTTCGCTGGGGAGATCTCAGTGGCGATGACTCTTAA
AA sequence Show only first row Show all	>Lus10012339 pacid=23176762 polypeptide=Lus10012339 locus=Lus10012339.g ID=Lus10012339.BGIv1.0 annot-version=v1.0 MRLDRSDLNLLYKARYPREIPDAYERLLLDAIEGERRLFIRSDELDAAWALFTPLLKELEEKKIVPELYPYGSRGPVGAHYLAAKHNVRWGDLSGDDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012339 [exp]	0	1
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012340 [exp]	1.0	0.9334
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10006716 [exp]	3.2	0.8794
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10029809 [exp]	5.7	0.8863
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10020729 [exp]	5.7	0.8921
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10001652 [exp]	5.8	0.8437
AT1G14690		MAP65-7	microtubule-associated protein...		Lus10035098 [exp]	6.9	0.8707
AT4G31560		HCF153	high chlorophyll fluorescence ...		Lus10039571 [exp]	7.3	0.8763
AT5G17170		ENH1	enhancer of sos3-1, rubredoxin...		Lus10002349 [exp]	7.7	0.8883
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021655 [exp]	8.8	0.8535
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10042962 [exp]	10.9	0.8718

Compare expression of checked genes

Lus10012339 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.