Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13130 49 / 4e-07 unknown protein AT2G04515 40 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006387 [exp] 233 / 8e-78 AT3G13130 70 / 2e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G166900 [exp] 50 / 2e-07 AT2G04515 52 / 1e-08 unknown protein Potri.001G366500 [exp] 44 / 2e-05 AT3G13130 64 / 5e-12 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [flax] [poplar] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Lus10012341 pacid=23176824 polypeptide=Lus10012341 locus=Lus10012341.g ID=Lus10012341.BGIv1.0 annot-version=v1.0 ATGGTACCAAGTCACCAGAAGAAGTCTCCGGCTTTGAGCCAATTGAGCAATTCCCAGTCAGTATGGAAGGCTACAAAGTTCTTAGCTCCACTTCTCTTGT CCTTTGTGCTGTTGCAGAACTTTTCTTATCTCCTTCCTCTAGTACTTGATTTCTCTACCATGGTTATAGACAAGAATTACATGTTTATCCTCTGCAATGG CATCTTGGTTCTGATTGCAAAGACTTCTGGTCTCAATGGAAATGGGGAAAATGTTCCAGCTACTGCTGGATCTCGGTCAGAGATGGAAGATAAGGAGAGA GCACAAAAGGAAGAAGAAAGAGAAGCAATTACAGAAGCTGGAAAGGAAGAGGAAGCCAAGAAAGATGTCATCTTGATCACAGAAGAATTCAATAAAGAGG AAGAAGGAGAAGCAATTGCAGAAGCCGAAAAGGAAGAGGAAGCCAAGAAAGATGTCATTTTGATCACAGAAGAACTGAAGGTTGATGCTGTTAAGCAGCA AAAGAATGGAGGCGATGAAGAAGTAGAAGAAGAGGGAAATGGGTTGCCGAGTGCAGAGGAATTGCAGAAAAAATGTGAAGAGTTCATTAGGAAGATGAAA GCTGGAATCAAGTATGAAGCTCAGCAGCAACAACAACAACAACAGCTCATCATGGTCCAGTGA
AA sequence Show only first row Show all	>Lus10012341 pacid=23176824 polypeptide=Lus10012341 locus=Lus10012341.g ID=Lus10012341.BGIv1.0 annot-version=v1.0 MVPSHQKKSPALSQLSNSQSVWKATKFLAPLLLSFVLLQNFSYLLPLVLDFSTMVIDKNYMFILCNGILVLIAKTSGLNGNGENVPATAGSRSEMEDKER AQKEEEREAITEAGKEEEAKKDVILITEEFNKEEEGEAIAEAEKEEEAKKDVILITEELKVDAVKQQKNGGDEEVEEEGNGLPSAEELQKKCEEFIRKMK AGIKYEAQQQQQQQQLIMVQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13130			unknown protein		Lus10012341 [exp]	0	1
AT4G27280			Calcium-binding EF-hand family...		Lus10031588 [exp]	2.2	0.9388
AT3G57120			Protein kinase superfamily pro...		Lus10027054 [exp]	3.0	0.9269
AT5G48290			Heavy metal transport/detoxifi...		Lus10016061 [exp]	3.5	0.9317
AT5G48290			Heavy metal transport/detoxifi...		Lus10016062 [exp]	4.0	0.9224
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012870 [exp]	4.6	0.9038
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	5.5	0.9150
AT3G13130			unknown protein		Lus10006387 [exp]	5.8	0.8821
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10021531 [exp]	7.7	0.8868
AT3G07200			RING/U-box superfamily protein...		Lus10022569 [exp]	8.5	0.9076
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10035841 [exp]	10.5	0.8962

Compare expression of checked genes

Lus10012341 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.