Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35840 1348 / 0 PHYC phytochrome C (.1) AT1G09570 1109 / 0 FHY2, HY8, FRE1, PHYA ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) AT2G18790 1086 / 0 OOP1, HY3, PHYB OUT OF PHASE 1, phytochrome B (.1) AT4G16250 1045 / 0 PHYD phytochrome D (.1) AT4G18130 950 / 0 PHYE phytochrome E (.1) AT2G01830 64 / 9e-10 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT1G27320 62 / 2e-09 AHK3 histidine kinase 3 (.1) AT1G66340 61 / 5e-09 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT5G35750 53 / 1e-06 AHK2 histidine kinase 2 (.1) AT2G17820 47 / 0.0001 AHK1, ATHK1 histidine kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006389 [exp] 2196 / 0 AT5G35840 1426 / 0.0 phytochrome C (.1) Lus10007594 [exp] 1103 / 0 AT1G09570 1852 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10037771 [exp] 1102 / 0 AT2G18790 1848 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10016911 [exp] 1096 / 0 AT2G18790 1836 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Lus10012151 [exp] 1079 / 0 AT1G09570 1855 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Lus10011967 [exp] 990 / 0 AT4G18130 1444 / 0.0 phytochrome E (.1) Lus10006388 [exp] 917 / 0 AT5G35840 493 / 8e-165 phytochrome C (.1) Lus10004593 [exp] 322 / 1e-99 AT4G18130 462 / 2e-153 phytochrome E (.1) Lus10004592 [exp] 196 / 4e-55 AT4G18130 321 / 1e-100 phytochrome E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G000300 [exp] 1135 / 0 AT1G09570 1806 / 0.0 ELONGATED HYPOCOTYL 8, FAR RED ELONGATED 1, FAR RED ELONGATED HYPOCOTYL 2, phytochrome A (.1.2) Potri.008G105200 [exp] 1131 / 0 AT2G18790 1840 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.010G145900 [exp] 1110 / 0 AT2G18790 1820 / 0.0 OUT OF PHASE 1, phytochrome B (.1) Potri.010G102900 [exp] 64 / 4e-10 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.008G137900 [exp] 64 / 5e-10 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.001G204200 [exp] 58 / 3e-08 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.001G057400 [exp] 57 / 6e-08 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.014G164700 [exp] 54 / 5e-07 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.003G032300 [exp] 53 / 1e-06 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 50 / 6e-06 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0183 [flax] [poplar] PAS_Fold PF08446 [flax] [poplar] PAS_2 PAS fold CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0183 [flax] [poplar] PAS_Fold PF00989 [flax] [poplar] PAS PAS fold CL0161 [flax] [poplar] GAF PF00360 [flax] [poplar] PHY Phytochrome region
Representative CDS sequence Show only first row Show all	>Lus10012342 pacid=23176802 polypeptide=Lus10012342 locus=Lus10012342.g ID=Lus10012342.BGIv1.0 annot-version=v1.0 ATGAAGAGGAAGGAGAGTCAACACTCATCATCAACAAGTTCCACAACAAATGGAGGAAGGAGTAGCTCAGCGCAGTCAAGACAGTCAACTCGTGTGAAAG TTGACCAGACTCCAATTGATGCACAGTTGGATGAAGAGTTTGAAGAATCCGAGCGTGGATTCGATTACTCTAGCTCCGTTAACCTCAATATCTCAAATTC GACAAGCAATGTTCCATCCGACACCGTATCAGCCTACCTCCAGAAGATGCAAAGAGGGAGTCTGATTCAGCCTTTTGGCTGTCTAATTGCTATCGAGGAA CAAAGTTTCAAGGTTGTCGCTTACAGTGAGAATGCTCAGGAGATGTTGGACTTAGCACAGCTTGCTGTCCCAAGTATGGGGCAGCAAGAAGCTCTTGCCT TTGGGATGGATGTGAGGGGATTCTTTCGAGCCTCCGGTGCTGCTGCTTTGCAGAAAGCCGCTAATCATCCTGAGCTTAATCTTCTCAATCCCATATTAGT CCACTGTAAAACATCAGGCAAGCCGTTTTATGCAATTCTTCATAGAATTGATGTCGGATTGGTTCTGGATTTGGAACCTGTGAATATGGCTGACTTGCCA CTTACAGCTACGGGTGCATTGACTTCTTACAAGATTGCTGCTAAAGCCATCTCCAAACTACAGTCCGTACCGAGTGGGAGTATAAATCTTTTGTGTGATC TTCTAGTTAATGAACTTAGAGACTTGACAGGTTATGACAGGGTGATGGTGTATAGATTTCATGATGATGAACACGGCGAAGTTATTGCAGAATCTGTCCA GTCTGACTTGGAACCGTATCTCGGTTTGCATTATCCTGCTACGGATATCCCGCAAGCTTCGAGATTTCTATTCATGAAGAACAAAGTCCGGATGATTTGC GACTGTCTAGCACCTTCAATAAAGGTAACACAAGACAAGAATTTGGCTGACCCCATCAATCTCTCTGGATCGACTTTGAGAGCGCCACACGGGTGTCACG CGCAGTATATGGCAAATATGGGCTCAATTGCATCGCTTGTGATGTCTGTTATAATCAATGACACTGAGGATGGAATAAATGAGATGGAAAGTGATCAGCA GATGGGGAGAAAGCTGTGGGGCTTGGTAGTTTGTCATCATCCAACTGCGAGGTTCGTTCCATTTCCTTTAAGATATGCGTGTGAGTTCTTGATTCAAGTA TTTGGCGTTCAGATCAACAAGGAAGTGGAGTTGGAAGCTCAGAGGAAGGAAAAACACGTTCTACAAACGCAAACTGTGCTATGTGACATGCTTCTCAGAG ATGCTCCTGTGGCGATTATGACCCAGTCGCCTAATGTGATGAATTTGGTCAAGTGTGATGGAGCTGCTCTCCTATACAGGAAAAAATGTTGGTTGCTTGG ACTAACGCCCACAGAAAAGCAAATTATGGATTTATCCGCTTGGTTACTTGAGTACCATAATGATAGCACAGGCCTAACTACTGACAGCATTATGGAAGCT GGTTATACGGGAGCTTCTGATCTTGCCAGTGCAATTTGCGGCATGGCTGCTATTAGGATTACTTCACAAGACTTCCTTTTTTGGTTTAGATCTCATACGG CCAAAGAGATCAAGTGGGGTGGTGCCAAACATGACCCTGGCGACAAGGATGGTGTGAGAAAGATGCATCCTAGATCGTCTTTTAAGGCGTTTTTGGAGGT AGTTAAGTGGCGAAGCTTGCCTTGGGAAGATTTGGAAATGGATGCCATTCACTCCTTACAACTGATATTGAAAGGTTCTGTGGAGGATGAAGCTGTTAAC GATTCGAAAGTGATTGTTCCTGCTCCAACTACTGACAATAGAATCCAAAGGGTGGATGAATTGCGAAGAGTAACGAATGAAATGGTTCTGGAACTAGCCA TTGGCATGCCTTTGGTTGATATTGTTGAGGGCAATTCAATTGATGTGGTCAAAAATATGCTATCTGTAGCTTCAGGAGGTGTAGAAGAGAAGAACATGGA AATCACATTCAGAACTTTCAATCGCGGGAAAAGCAAAGGTCCCGTGTATCTTGTTGTTAGTGTGTGTTGCAATCGAGACATCAAGGGAGACATGGCGGGT ATCTGCTTTGTCGGGCAAGATCTCACGGGACAAAAGATGGTCATGGATAGATACAAACGGTTCAAGGGAGATTACCTAGGAATCGTCAGGAATCAGTCTG CCATTATTCCTCCTATTTTCATGAGTGATGAACATGGTAAATGCTTGGAGTGGAATGAGGCAATGCAAAAATTGTCCGGTTTGAAGAGGGAAGAAGCTAT CGGACGCCAACTTCTTGGGGAGGTTTTCACTGTGGACAATTCTGGTTGCCGGGTTAAAGATCGGGACACCCTAACCAAGCTCAGGATCTTACTGAACGGA GCACTTGCTGGCCAGGATTCAGAGCCCTTGTTATTTGGTTTATTTGATAAACATGGGAAGCCTGTTGATGCTTTAGTTAATGGAAATGCAAGGACTGATG CAGAGGGCCGGGTTTCTGGGGTTCTGTTCTTTTTGTATGTTCCGAGTCGAGAACTGCAATATGCATGGCAGGTCCAGAAAATATCTGAACAGGCTGCAGC TACTAGCCTTAATAAGCTGACATATGTACGCCACGAAGCTGCGAAAGGCCTAAATGGCCTAACTTTGATGCAGAACCTAATGGAAAGAACCGATTTGAGC GAAGAACAGAAGCAGCTTTTTAAGACGAGCACCTTGTGTCGAGAACAGTTGACTACAATCATCAATGATACTGATATTGGCCGGATTGAAGATTTGTATC TGGAGCTCCGCACTGTGGAATTCAACCTCGGGGAAGTTCTAGACGTGGTTGTCAAGCAAGCTATGGAGTTGAGCCTTGACCGGAAAGTAGAGATTGCTCG CGATTTTCCAGCAGAGTTGTCTTCCATGAACTTGTATGGAGATAACTTGAGGCTCCAGCAAGTTCTGGCTGATTTCTTGACAAATTCAATACTGTTCACT CCAGCACTGAATGAGTCCTCTGTTGCGTTGAAAGTAGTTTTCCGGAAGGAATGCATGGGAGTGAAGGTGCAGATCGTCCACCTCGAGTTTCAAATCAGCC ATCCGGCTCCAGGTTTCCCTGAAGATCTAGTCCGGGAAATGTTTCACTCGCAGGGGAAAGGTACTTCAAGGGAAGGTCTTGGCCTTTACATGAGCCACAA GCTAGTGAAGACCATGAATGGGAATGTACAGTATCTCCGGGAAGCAGAAAGTTCGTCTTTTATCATCCTCATCGCGTTCCCTCTGGTTACACCAGTCGAG AATCCCTCAAGGTCAAAAGAGTCAAGTTGA
AA sequence Show only first row Show all	>Lus10012342 pacid=23176802 polypeptide=Lus10012342 locus=Lus10012342.g ID=Lus10012342.BGIv1.0 annot-version=v1.0 MKRKESQHSSSTSSTTNGGRSSSAQSRQSTRVKVDQTPIDAQLDEEFEESERGFDYSSSVNLNISNSTSNVPSDTVSAYLQKMQRGSLIQPFGCLIAIEE QSFKVVAYSENAQEMLDLAQLAVPSMGQQEALAFGMDVRGFFRASGAAALQKAANHPELNLLNPILVHCKTSGKPFYAILHRIDVGLVLDLEPVNMADLP LTATGALTSYKIAAKAISKLQSVPSGSINLLCDLLVNELRDLTGYDRVMVYRFHDDEHGEVIAESVQSDLEPYLGLHYPATDIPQASRFLFMKNKVRMIC DCLAPSIKVTQDKNLADPINLSGSTLRAPHGCHAQYMANMGSIASLVMSVIINDTEDGINEMESDQQMGRKLWGLVVCHHPTARFVPFPLRYACEFLIQV FGVQINKEVELEAQRKEKHVLQTQTVLCDMLLRDAPVAIMTQSPNVMNLVKCDGAALLYRKKCWLLGLTPTEKQIMDLSAWLLEYHNDSTGLTTDSIMEA GYTGASDLASAICGMAAIRITSQDFLFWFRSHTAKEIKWGGAKHDPGDKDGVRKMHPRSSFKAFLEVVKWRSLPWEDLEMDAIHSLQLILKGSVEDEAVN DSKVIVPAPTTDNRIQRVDELRRVTNEMVLELAIGMPLVDIVEGNSIDVVKNMLSVASGGVEEKNMEITFRTFNRGKSKGPVYLVVSVCCNRDIKGDMAG ICFVGQDLTGQKMVMDRYKRFKGDYLGIVRNQSAIIPPIFMSDEHGKCLEWNEAMQKLSGLKREEAIGRQLLGEVFTVDNSGCRVKDRDTLTKLRILLNG ALAGQDSEPLLFGLFDKHGKPVDALVNGNARTDAEGRVSGVLFFLYVPSRELQYAWQVQKISEQAAATSLNKLTYVRHEAAKGLNGLTLMQNLMERTDLS EEQKQLFKTSTLCREQLTTIINDTDIGRIEDLYLELRTVEFNLGEVLDVVVKQAMELSLDRKVEIARDFPAELSSMNLYGDNLRLQQVLADFLTNSILFT PALNESSVALKVVFRKECMGVKVQIVHLEFQISHPAPGFPEDLVREMFHSQGKGTSREGLGLYMSHKLVKTMNGNVQYLREAESSSFIILIAFPLVTPVE NPSRSKESS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35840		PHYC	phytochrome C (.1)		Lus10012342 [exp]	0	1
AT5G35840		PHYC	phytochrome C (.1)		Lus10006389 [exp]	1.0	0.8958
AT5G35840		PHYC	phytochrome C (.1)		Lus10006388 [exp]	4.0	0.7844
AT1G09660			RNA-binding KH domain-containi...		Lus10037344 [exp]	4.6	0.7944
AT3G12590			unknown protein		Lus10001698 [exp]	7.2	0.8151
AT1G05500		SYT5, NTMCTYPE2...	synaptotagmin 5, ARABIDOPSIS T...		Lus10038117 [exp]	8.1	0.7497
AT2G38610			RNA-binding KH domain-containi...		Lus10035608 [exp]	11.5	0.7494
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008044 [exp]	12.0	0.7453
AT3G26730			RING/U-box superfamily protein...		Lus10031993 [exp]	16.0	0.7308
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10031104 [exp]	17.5	0.7582
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10034723 [exp]	21.6	0.7243

Compare expression of checked genes

Lus10012342 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.