Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16360 199 / 4e-64 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) AT5G21170 157 / 1e-47 AKINBETA1 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) AT2G28060 70 / 2e-15 5'-AMP-activated protein kinase beta-2 subunit protein (.1) AT1G09020 43 / 7e-05 ATSNF4, SNF4 homolog of yeast sucrose nonfermenting 4 (.1) AT1G27070 42 / 0.0001 5'-AMP-activated protein kinase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006390 [exp] 386 / 1e-137 AT4G16360 222 / 3e-72 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10038783 [exp] 189 / 9e-60 AT4G16360 395 / 1e-139 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10039076 [exp] 189 / 1e-59 AT4G16360 392 / 2e-138 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Lus10037424 [exp] 154 / 2e-46 AT5G21170 305 / 2e-104 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10041287 [exp] 146 / 9e-43 AT5G21170 295 / 6e-100 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Lus10003355 [exp] 83 / 2e-20 AT2G28060 150 / 2e-48 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Lus10008427 [exp] 82 / 4e-20 AT2G28060 157 / 6e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Lus10037220 [exp] 43 / 9e-05 AT1G27070 314 / 7e-101 5'-AMP-activated protein kinase-related (.1) Lus10036706 [exp] 42 / 0.0001 AT1G27070 323 / 8e-105 5'-AMP-activated protein kinase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G167400 [exp] 239 / 1e-79 AT4G16360 206 / 2e-65 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.016G006400 [exp] 212 / 7e-69 AT4G16360 415 / 5e-148 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.006G005800 [exp] 203 / 3e-65 AT4G16360 408 / 3e-145 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2.3) Potri.001G220800 [exp] 162 / 3e-49 AT5G21170 316 / 1e-108 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.009G021600 [exp] 156 / 4e-47 AT5G21170 319 / 1e-109 5'-AMP-activated protein kinase beta-2 subunit protein (.1.2) Potri.009G008700 [exp] 81 / 2e-19 AT2G28060 158 / 2e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Potri.004G213600 [exp] 76 / 6e-18 AT2G28060 156 / 8e-51 5'-AMP-activated protein kinase beta-2 subunit protein (.1) Potri.010G034600 [exp] 42 / 0.0002 AT1G27070 333 / 4e-108 5'-AMP-activated protein kinase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04739 [flax] [poplar] AMPKBI 5'-AMP-activated protein kinase beta subunit, interaction domain
Representative CDS sequence Show only first row Show all	>Lus10012343 pacid=23176818 polypeptide=Lus10012343 locus=Lus10012343.g ID=Lus10012343.BGIv1.0 annot-version=v1.0 ATGCAGCAGGCGGCTCAGTACTCAATAGGACTTAGTACTCAGGCGTCTGAGAAACTGAATCCTGTGATGATCACATGGAGTTATGAGGGAAGCCATGTTG CTCTCACTGGTTCATGGGATAATTGGGGGACAAGAGAGCCTTTGCAGCGGTCAGGCAAGGATTTCATGGTTATGAAATTGCTCCCTTCTGGTATATACCA CTACCGGTTCATCGTCGATGCGAATCTGACATATGCTCCAGAGCTTCCATGGGAGTGTGATGATTCTGGGATTGCTTACAATGTCTTGAATGTTCAGGAC AATGTTCCTGAAGCTAGAGAGAGCTTGTCAGAGTTTGAATCCCCATCTTCCCCATCATCGAGCTACGGAATAGAACCACTAAACATGGAAGATCTCAGCA AGCCTCCTCCAGAAATACCACCACAGCTTCAGCTAACACTGTTACACGAGAGATTCTCTACAGTTGATGGACAACAGTCCTTGCCAAGGCCAGTCCATGC TGTTCTGAACCATCTCTACATTCAGAATAGTGAACATGGCCAGCCGGTCGTCGCCCTTGGCTCGACCCATAGGTTTCTTCACAAGTATGTCACTGTGGTA CTATACAAGCCCTCTCAGAGATGA
AA sequence Show only first row Show all	>Lus10012343 pacid=23176818 polypeptide=Lus10012343 locus=Lus10012343.g ID=Lus10012343.BGIv1.0 annot-version=v1.0 MQQAAQYSIGLSTQASEKLNPVMITWSYEGSHVALTGSWDNWGTREPLQRSGKDFMVMKLLPSGIYHYRFIVDANLTYAPELPWECDDSGIAYNVLNVQD NVPEARESLSEFESPSSPSSSYGIEPLNMEDLSKPPPEIPPQLQLTLLHERFSTVDGQQSLPRPVHAVLNHLYIQNSEHGQPVVALGSTHRFLHKYVTVV LYKPSQR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16360			5'-AMP-activated protein kinas...		Lus10012343 [exp]	0	1
AT4G16360			5'-AMP-activated protein kinas...		Lus10006390 [exp]	3.5	0.8693
AT4G13150			unknown protein		Lus10025925 [exp]	3.5	0.8877
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10011805 [exp]	4.5	0.8745
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10019145 [exp]	5.1	0.8952
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10014428 [exp]	6.5	0.8641
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Lus10013384 [exp]	9.9	0.8806
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10039671 [exp]	15.5	0.8491
AT1G29380			Carbohydrate-binding X8 domain...		Lus10004546 [exp]	17.7	0.8782
AT2G23790			Protein of unknown function (D...		Lus10016305 [exp]	19.4	0.8591
AT2G28880		ADCS, EMB1997	embryo defective 1997, aminode...		Lus10041403 [exp]	19.7	0.8344

Compare expression of checked genes

Lus10012343 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.