Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12730 407 / 8e-141 FLA2 FASCICLIN-like arabinogalactan 2 (.1) AT5G55730 346 / 2e-116 FLA1 FASCICLIN-like arabinogalactan 1 (.1.2) AT2G45470 260 / 6e-83 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT3G60900 248 / 4e-78 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT3G12660 129 / 8e-35 FLA14 FASCICLIN-like arabinogalactan protein 14 precursor (.1) AT2G24450 107 / 2e-26 FLA3 FASCICLIN-like arabinogalactan protein 3 precursor (.1) AT3G46550 108 / 1e-25 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT4G31370 98 / 5e-23 FLA5 FASCICLIN-like arabinogalactan protein 5 precursor (.1) AT5G60490 71 / 7e-14 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT5G03170 67 / 1e-12 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006391 [exp] 613 / 0 AT4G12730 440 / 7e-153 FASCICLIN-like arabinogalactan 2 (.1) Lus10001178 [exp] 526 / 0 AT4G12730 432 / 4e-150 FASCICLIN-like arabinogalactan 2 (.1) Lus10001752 [exp] 427 / 1e-149 AT4G12730 340 / 1e-115 FASCICLIN-like arabinogalactan 2 (.1) Lus10016617 [exp] 382 / 9e-131 AT5G55730 445 / 4e-155 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10022517 [exp] 375 / 4e-128 AT5G55730 438 / 2e-152 FASCICLIN-like arabinogalactan 1 (.1.2) Lus10009235 [exp] 261 / 2e-83 AT2G45470 516 / 0.0 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10038004 [exp] 184 / 3e-56 AT2G45470 316 / 8e-108 FASCICLIN-like arabinogalactan protein 8 (.1) Lus10040821 [exp] 126 / 4e-32 AT3G46550 391 / 6e-134 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Lus10016554 [exp] 113 / 2e-27 AT3G46550 398 / 8e-137 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G168100 [exp] 468 / 1e-164 AT4G12730 427 / 6e-149 FASCICLIN-like arabinogalactan 2 (.1) Potri.011G093500 [exp] 376 / 2e-128 AT5G55730 432 / 4e-150 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.001G367900 [exp] 365 / 3e-124 AT5G55730 454 / 5e-159 FASCICLIN-like arabinogalactan 1 (.1.2) Potri.014G071700 [exp] 258 / 6e-82 AT2G45470 494 / 2e-174 FASCICLIN-like arabinogalactan protein 8 (.1) Potri.001G037800 [exp] 133 / 2e-35 AT3G12660 166 / 2e-49 FASCICLIN-like arabinogalactan protein 14 precursor (.1) Potri.018G097000 [exp] 127 / 2e-32 AT3G46550 315 / 3e-104 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.018G005100 [exp] 121 / 2e-31 AT2G24450 174 / 2e-53 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G174900 [exp] 120 / 3e-30 AT3G46550 326 / 2e-108 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) Potri.006G276200 [exp] 117 / 6e-30 AT2G24450 159 / 4e-47 FASCICLIN-like arabinogalactan protein 3 precursor (.1) Potri.006G129200 [exp] 68 / 9e-13 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10012344 pacid=23176808 polypeptide=Lus10012344 locus=Lus10012344.g ID=Lus10012344.BGIv1.0 annot-version=v1.0 ATGTCACACGCGCCGCCGCCTTCCGCCTTCACCGTCACCCTCCTATTCTCCATCTTCCTCTTCTCCGCCACCACCACCACCACAGTCTCCGCCCACAACA TAACCCACATATTAGCAAAACACCCGGAGTTCTCCACCTTCAACCACTACCTCACCGTCACCCACCTGGCCGCCGAGATAAACCGCCGCGAGACCATCAC CGTCCTGGCACTGGACAACGCCGCCATGTCGTCTTTACTAGACAAGCACCTCTCGGTCACCACGCTCAGGAACGTGCTGTCCCTGCACGTTCTGGTGGAC TACTTCGGCGCCAAGAAGCTCCACCAGATCACGGGTGGCTCAACCCTGAGCTCCACCATGTTCCAGGCCACCGGCGCCGCTCCGGGGACTTCGGGTTACT TGAACATCACGGATCTGAAAGGTGGGAAGGTGGCGTTCGCCCCTGAGGAGAATGACGGCAAGATGGACGCTCTTTTCGTTAAGTCGGTCGTCGAGATGCC TTACAACATCTCCGTCGTGCATATCAGTCAGGCATTAAATTCAGCGGAAGCAGAGGCGCCAGCATCAGCACCATCACTGAACCTGACAGCAATCCTCCAC AAGCAAGGATGCACCAAATTCGCCGACTTACTATCCGCCAGCGGAGCACTATCCACCTTCGAAGACAACGTCGACGGAGGTTTAACGGTGTTCTGCCCTT CCGACGCTTCCGTCACCTCATTCATGCCCAAATACAAAAACCTAACCGACTCCCACAAGCTCTCCCTCTGCCTCTACCACGGAATCCCGGTCTTCATGTC GATGCAGATGCTCAAATCCAACAACGGCGTCGCCAACACCCTCGCCACCGATGGCGCCACCAAGTACGACCTCACCGTTCAGGACGACGGCGAGATCGTC AAGCTGGAGACGAAAGTCGTCACGGCGACGATTACTGGGACGCTGAAGGAGCAGGATCCGTTGATTGTGTTTAAAGTGGATAAGGTTTTGCAGCCCAAGG AGCTGTTTAAGGCGACGGTGGATGACGACGCGCCGGCTCCCAAGGGTGCTAAGTCGGCTAAGGCTAAGGGGAAGGCGAAATCGGTTGCTGCTGATTCGCC CGATGATGCCGATGCGCCCGAAGGGGATTCGGATGATTCGACGGCTGCTGATGATGATCAGAATGGTGTTGGGAAGATGGACGGTGGGAGATTGGTGATG GTTGCTTTGAGTTTGTGTATAGGCGTCATGTTGCTTTGA
AA sequence Show only first row Show all	>Lus10012344 pacid=23176808 polypeptide=Lus10012344 locus=Lus10012344.g ID=Lus10012344.BGIv1.0 annot-version=v1.0 MSHAPPPSAFTVTLLFSIFLFSATTTTTVSAHNITHILAKHPEFSTFNHYLTVTHLAAEINRRETITVLALDNAAMSSLLDKHLSVTTLRNVLSLHVLVD YFGAKKLHQITGGSTLSSTMFQATGAAPGTSGYLNITDLKGGKVAFAPEENDGKMDALFVKSVVEMPYNISVVHISQALNSAEAEAPASAPSLNLTAILH KQGCTKFADLLSASGALSTFEDNVDGGLTVFCPSDASVTSFMPKYKNLTDSHKLSLCLYHGIPVFMSMQMLKSNNGVANTLATDGATKYDLTVQDDGEIV KLETKVVTATITGTLKEQDPLIVFKVDKVLQPKELFKATVDDDAPAPKGAKSAKAKGKAKSVAADSPDDADAPEGDSDDSTAADDDQNGVGKMDGGRLVM VALSLCIGVMLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10012344 [exp]	0	1
AT5G40150			Peroxidase superfamily protein...		Lus10039445 [exp]	1.0	0.9565
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	2.0	0.9068
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10040821 [exp]	3.2	0.8991
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10020521 [exp]	3.2	0.9197
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10000637 [exp]	6.3	0.8902
					Lus10025731 [exp]	7.3	0.9074
AT1G08200		AXS2	UDP-D-apiose/UDP-D-xylose synt...		Lus10005370 [exp]	7.7	0.8926
					Lus10019304 [exp]	11.2	0.8923
AT3G08670			unknown protein		Lus10025209 [exp]	12.0	0.8783
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10033356 [exp]	14.0	0.8696

Compare expression of checked genes

Lus10012344 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.