Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04865 318 / 2e-101 Aminotransferase-like, plant mobile domain family protein (.1) AT2G25010 149 / 4e-39 Aminotransferase-like, plant mobile domain family protein (.1) AT1G17930 130 / 7e-33 Aminotransferase-like, plant mobile domain family protein (.1) AT1G48120 71 / 8e-13 hydrolases;protein serine/threonine phosphatases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006393 [exp] 880 / 0 AT2G04865 331 / 5e-106 Aminotransferase-like, plant mobile domain family protein (.1) Lus10001163 [exp] 466 / 6e-164 AT2G04865 347 / 3e-115 Aminotransferase-like, plant mobile domain family protein (.1) Lus10001737 [exp] 364 / 2e-118 AT2G04865 636 / 0.0 Aminotransferase-like, plant mobile domain family protein (.1) Lus10007358 [exp] 311 / 4e-101 AT2G04865 259 / 2e-79 Aminotransferase-like, plant mobile domain family protein (.1) Lus10042411 [exp] 48 / 1e-05 AT1G48120 56 / 2e-08 hydrolases;protein serine/threonine phosphatases (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10536 [flax] [poplar] PMD Plant mobile domain
Representative CDS sequence Show only first row Show all	>Lus10012346 pacid=23176773 polypeptide=Lus10012346 locus=Lus10012346.g ID=Lus10012346.BGIv1.0 annot-version=v1.0 ATGGACGTTAGTCCAGGACCAGTTGATCTCTCCGTGCTGTATGAACAGGACAAGCATGTCTCTTCTGCAGTATGGGATGGCCAGTGCTGGTGTCACTTCT ACCTTAACATTGAGCAGCGTCCTAAGCTGAACCGGGATCCTATCCACGACAGCTTCCCGTTCGTGCTCAGGTGGAAAGGAAAGCAAAATGGGCCAACAAC AAACCGTGATGTGGTCTTTTACAGGAAGAAATTGGATGCATTGAAACCGAACGATGTGGAGTGGATTCCTGCAAACTACATGGACAGTACGGCAGTACCA GAAACTATCAGAGACAGTTTGATTTTGGGGAGATCAAAGACGATGCTCATATGCTTTGACAAGGCCGAGAGACACCTGCCTGACCGCTGCTTGAGGCAGT ATGGCATGTTTCAATCTATCCCGGAAGATGTCCTCCGATGGCTGAGAAAGAGTCGAGGAGTTGATGGTGGTGTAGACTTGTCTGGGAAAATGGAGCTCGA ACTTAACGAATGGGCTAGTCGACATCTCCATATCGTGGAAGGCGCTGATGCTGTGGCCGACGAAACTGTGTACATGGAATGGTACTTGAGAATCACTAGG AGAGTGGTTGGGAGACCTATATCACTGTCATCTGAGTTCCAGAGAACGATTGCTGGGATAAGAGAGATTGCTTACTTGGCGGATTCATTTTCGACAGAAG GGTTGGATGGTGAACAATTCCAGTCGATTTCAAGGATCAGATATATTGCACAGGACTGTTTGAGGGATCAGTCTGGAAGTCTTGCTGCATCAGCAATACC AATCGATACTCCACCGGTTGAAGTGGTGAAAAGAATTAGGGGGAAGGAGAGGGTTAGAAGAAATGGCGAGAAACGCAGGAGAAAAGACGAGATTGTAGAG TATCAGGAAGGCGGTGTGGATGATGATACATCTCATCACTTCTATGCTGGAGTTGTAGAGGTTGATCCATTACATGCAGTAGTCTGTACCAATGCTGAGA TCATTTCGTTGCAGCAGCGCGATGCAGCTTCCAATATGGACGTTGATGCTCAGTATTTATCTAGGTTGTCTGATGAGGATGAAAATAAAAAGTTAGCTAA TTGTCTCTCTAATGTTGCAACTATTGAGTTGAATTCTGAAGTCTGTGACAGAATAATTGCAGAGGCTGCTGATTATGAGCCTAATGATCAAACTGAGAAG AATGACTCAAAGCCGTTCGAGGGTGGAGTTAATTCTCAGATCTTTGAGGAAGAGACGGTTGATCTGACGAAAATGGCTGGTGAGGTTCCTTACGAAAGTT CTGTGGTAAGTGAATTGCAGAAACCTTCAGATGCAACTACAATGACGGATGAAGGTGCAATGAGTTATGCAAGTGAAATGGCCAGCGATTTGCAGCCTTC TGGGAATGACTTGTATCCTTCTTCTGATGTCAAACTAGAGGTCAATGAAATGAAGCCCCTGACGCAACTAATGGAAAGGAGGTAA
AA sequence Show only first row Show all	>Lus10012346 pacid=23176773 polypeptide=Lus10012346 locus=Lus10012346.g ID=Lus10012346.BGIv1.0 annot-version=v1.0 MDVSPGPVDLSVLYEQDKHVSSAVWDGQCWCHFYLNIEQRPKLNRDPIHDSFPFVLRWKGKQNGPTTNRDVVFYRKKLDALKPNDVEWIPANYMDSTAVP ETIRDSLILGRSKTMLICFDKAERHLPDRCLRQYGMFQSIPEDVLRWLRKSRGVDGGVDLSGKMELELNEWASRHLHIVEGADAVADETVYMEWYLRITR RVVGRPISLSSEFQRTIAGIREIAYLADSFSTEGLDGEQFQSISRIRYIAQDCLRDQSGSLAASAIPIDTPPVEVVKRIRGKERVRRNGEKRRRKDEIVE YQEGGVDDDTSHHFYAGVVEVDPLHAVVCTNAEIISLQQRDAASNMDVDAQYLSRLSDEDENKKLANCLSNVATIELNSEVCDRIIAEAADYEPNDQTEK NDSKPFEGGVNSQIFEEETVDLTKMAGEVPYESSVVSELQKPSDATTMTDEGAMSYASEMASDLQPSGNDLYPSSDVKLEVNEMKPLTQLMERR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04865			Aminotransferase-like, plant m...		Lus10012346 [exp]	0	1
AT4G27090			Ribosomal protein L14 (.1)		Lus10003627 [exp]	2.2	0.7699
AT1G12650			unknown protein		Lus10024493 [exp]	13.8	0.7382
AT2G04480			unknown protein		Lus10001750 [exp]	16.5	0.7191
AT2G24830	C3HZnF		zinc finger (CCCH-type) family...		Lus10026901 [exp]	18.8	0.7158
AT5G26110			Protein kinase superfamily pro...		Lus10006903 [exp]	21.9	0.6879
AT5G46060			Protein of unknown function, D...		Lus10000133 [exp]	28.6	0.7225
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10024689 [exp]	30.3	0.6922
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002642 [exp]	37.8	0.6738
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10027634 [exp]	45.9	0.6894
AT1G07290		GONST2	golgi nucleotide sugar transpo...		Lus10001205 [exp]	53.3	0.6632

Compare expression of checked genes

Lus10012346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.