Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07800 303 / 6e-105 Thymidine kinase (.1) AT5G23070 288 / 2e-98 Thymidine kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039055 [exp] 306 / 2e-105 AT5G23070 309 / 9e-106 Thymidine kinase (.1) Lus10038804 [exp] 299 / 3e-96 AT5G64320 367 / 3e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006394 [exp] 273 / 7e-94 AT3G07800 178 / 2e-56 Thymidine kinase (.1) Lus10016925 [exp] 92 / 4e-24 AT5G23070 58 / 1e-11 Thymidine kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G222300 [exp] 330 / 5e-116 AT3G07800 316 / 2e-110 Thymidine kinase (.1) Potri.016G009951 [exp] 318 / 4e-110 AT3G07800 292 / 7e-100 Thymidine kinase (.1) Potri.006G015800 [exp] 311 / 1e-107 AT5G23070 306 / 8e-105 Thymidine kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00265 [flax] [poplar] TK Thymidine kinase
Representative CDS sequence Show only first row Show all	>Lus10012347 pacid=23176783 polypeptide=Lus10012347 locus=Lus10012347.g ID=Lus10012347.BGIv1.0 annot-version=v1.0 ATGGCCGCATCAAAGTCCTTTTCGGCTTTCAGTTTGTCCGACGGCGGCCGCGACCTCCTCGGGAAGTCTCCGGCCGGCGAGGTACATGTCATCGTTGGCC CCATGTTCGCTGGGAAAACCACTGCTCTGCTCCGTCGCATCAAATCTGAAATCAACAGCGGAAGAAATGTCGCCATGGTGAAGTCGAGCAAGGATAATAG GTATGCTATAGATTCAGTGGTGTCACACGATGGTGCAAAGTTCCCTTGCTGGGCGTTGAATGAGCTGACTTCGTTTCAATCCAAAGTGGGTGTCGAAGCT TATCAAAAGATCGATGTGATTGGGATTGATGAGGCACAATTCTTTGATGATCTATACGATTTCTGCTGCAAAGCTGCTGACGAAGACGGCAAGACTGTCA TACTGGCAGGTCTAGATGGAGACTACTTGAGGAGGAGCTTTGGATCCGTGCTAGATGTAGTACCGTTGGCTGACACCGTAACGAAGCTAACAGCAAGGTG CGAACTTTGCGGGAAGAGAGCAGTCTTCACACTCAGGAAGACGGAGCAAACTGAGACGGAGCTGATTGCTGGAGCTGATGTATATATGCCGGTTTGCAGG CTGCACTACATCAATGGAGAAGTGGTGAAGGAAGTTGCAAAGGGTGTCCTCGAACCTTCCAAAACCAGGGCTCATGACTCTTCCTCTAATTCTGCGGCTG TTAAAGTTGCTTAA
AA sequence Show only first row Show all	>Lus10012347 pacid=23176783 polypeptide=Lus10012347 locus=Lus10012347.g ID=Lus10012347.BGIv1.0 annot-version=v1.0 MAASKSFSAFSLSDGGRDLLGKSPAGEVHVIVGPMFAGKTTALLRRIKSEINSGRNVAMVKSSKDNRYAIDSVVSHDGAKFPCWALNELTSFQSKVGVEA YQKIDVIGIDEAQFFDDLYDFCCKAADEDGKTVILAGLDGDYLRRSFGSVLDVVPLADTVTKLTARCELCGKRAVFTLRKTEQTETELIAGADVYMPVCR LHYINGEVVKEVAKGVLEPSKTRAHDSSSNSAAVKVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07800			Thymidine kinase (.1)		Lus10012347 [exp]	0	1
AT3G51290			Protein of unknown function (D...		Lus10041884 [exp]	1.4	0.9505
AT1G07820			Histone superfamily protein (....		Lus10015492 [exp]	2.0	0.9493
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Lus10035915 [exp]	2.4	0.9450
AT5G25590			Protein of unknown function (D...		Lus10037901 [exp]	6.3	0.9423
AT1G08880		HTA5 ,G-H2AX ,G...	histone H2A 5, gamma histone v...		Lus10028044 [exp]	6.7	0.9423
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10005444 [exp]	7.0	0.9330
AT1G31335			unknown protein		Lus10038328 [exp]	7.4	0.9261
AT1G71760			unknown protein		Lus10030260 [exp]	7.7	0.9346
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Lus10030378 [exp]	9.9	0.9184
AT5G58090			O-Glycosyl hydrolases family 1...		Lus10028104 [exp]	10.4	0.9154

Compare expression of checked genes

Lus10012347 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.