Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07810 413 / 5e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G26650 320 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 317 / 2e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G55550 296 / 6e-95 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G14300 223 / 2e-67 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G33410 222 / 4e-67 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 176 / 4e-50 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G58470 168 / 3e-47 XF41, ATRBP1 RNA-binding protein 1 (.1) AT3G13224 153 / 7e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 150 / 5e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006396 [exp] 481 / 3e-169 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043168 [exp] 385 / 6e-129 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 377 / 6e-126 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 353 / 2e-116 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 351 / 3e-116 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039054 [exp] 349 / 1e-115 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 350 / 4e-115 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017555 [exp] 349 / 1e-114 AT3G07810 423 / 7e-144 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10022889 [exp] 234 / 4e-72 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G161600 [exp] 462 / 9e-160 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 444 / 1e-152 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G015700 [exp] 395 / 2e-133 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G361300 [exp] 391 / 8e-132 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 389 / 8e-131 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.016G010200 [exp] 380 / 1e-127 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G067500 [exp] 244 / 5e-75 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G170400 [exp] 241 / 9e-74 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 236 / 3e-72 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 233 / 4e-71 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10012348 pacid=23176793 polypeptide=Lus10012348 locus=Lus10012348.g ID=Lus10012348.BGIv1.0 annot-version=v1.0 ATGCAAGCGTCAGCAGAGAATGGGAAGTTATTCATCGGCGGGATATCATGGGACACAAACGAAGACCGGCTCCGAGAATATTTCGAGTCGTTTGGGGATG TCGTTGAAGCTGTAATAATGAAGGATCGAACCACCGGCCGTGCCCGTGGCTTTCGATTTGTGGTCTTCGCCGATGGAGCTGTGGCCGAGCGTGTCACTCA AGAGAAACACAACATCGATGGAAGAATGGTTGAGGCAAAGAGAGCAGTTCCAAAGGATGATCAAAACATTGCAAACAGAAGCCCCAGCAGTGTCCAATAT GGTTCTCCGGGTCAAGGAAGGACTCGGAAGATATTTGTTGGAGGTTTAGCTTCCACAGTTACAGAGACCGATTTCCGAACTTACTTTGAGCAGTTTGGAA CGATCATAGACGTGGTGGTGATGTACGATCACAACACGCAGAGGCCTAGAGGGTTCGGATTCATTACTTATGACTCGGAGGAGGCGGTGGACAAAGTCCT GCTCTTGAAGACTTTCCATGAGCTGAATGGTAAAATGGTGGAGGTCAAGCGAGCAGTTCCCAAAGAGCTATCTCCAGGTGGTGGTCTGAGCCGTGGTAGC ACCTCCCCACTAGGTGGGTATGTGAATGGCTATGGTGGTCTTAGTAGGGCTAGTAGCTTTCTTAATGGCTACAATCAAGGGTACAACCCGAACACAGTTG GCTATGGACTTCGAATGGACCAAGGTAGGTTCAGTCCTGTTGTGGCCAGTGGTGGTCGAAGTGGGTTCGCACATCATCATCCTTTTGGCTCGGGTTATGG AATGGGTGTGAACTTTGAGCCTACGACGCTGAGACAAGCTGCTTATGGAGGCAATGCTGCAAATTTTAACGCGAATTTGAACTACGGAAGGGGAATGATG AATCATCCGTATTACATCGAGAATACAAATAGATACGGCAGCCCAATCGGATATGAAAATGGAGGAGGTAGTAATAACCTTGGAGGGAACACTTCGTTTT TCAGTTCGGTTACGAGGAACATGTGGGGAAATGGGGGTCTAAACTACAATAACTCGGCCGCTGCTAATTCTGCTGGTTTGGATAATGCATTTGGCAGCGA TAATAGCCTAAACTGGGGCTCGTCCACGACACTTTCGGCTCAAGGCGACGAAGGGAACATCAATGTACCTAACAACGGTTTGAATTTTGCATATGGTGGG GGTGGTGTGGAGAACAACTTCAGTTTGGGCTCTGCAGGTGGCTATCGAAGAAGCAATAGCAGGAACAATGTGTTGATCAATCCTCCTGCATCATCGGCTG CTGGATTCGAAGGAACTTTCGCGGATCACCTTTATGTTGGAGTTGGTGGTTCTGAAGATTACGGAGAACCAACTTGGCGATCTTCTGATATAGATGGAGG AGGTGGGACGTTTGGTTACAACAGCCAGGGCAGCCTTCCGATTGGCAACAATGCCGGTCCGGATGTTGCAGTGAAAAGCCCTTCTCCTGGTTTTGTTGGT GGCTATAGTGTTAACAAACGACAGACAAATAGAGGTAAAGAATCATACTAG
AA sequence Show only first row Show all	>Lus10012348 pacid=23176793 polypeptide=Lus10012348 locus=Lus10012348.g ID=Lus10012348.BGIv1.0 annot-version=v1.0 MQASAENGKLFIGGISWDTNEDRLREYFESFGDVVEAVIMKDRTTGRARGFRFVVFADGAVAERVTQEKHNIDGRMVEAKRAVPKDDQNIANRSPSSVQY GSPGQGRTRKIFVGGLASTVTETDFRTYFEQFGTIIDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLLKTFHELNGKMVEVKRAVPKELSPGGGLSRGS TSPLGGYVNGYGGLSRASSFLNGYNQGYNPNTVGYGLRMDQGRFSPVVASGGRSGFAHHHPFGSGYGMGVNFEPTTLRQAAYGGNAANFNANLNYGRGMM NHPYYIENTNRYGSPIGYENGGGSNNLGGNTSFFSSVTRNMWGNGGLNYNNSAAANSAGLDNAFGSDNSLNWGSSTTLSAQGDEGNINVPNNGLNFAYGG GGVENNFSLGSAGGYRRSNSRNNVLINPPASSAAGFEGTFADHLYVGVGGSEDYGEPTWRSSDIDGGGGTFGYNSQGSLPIGNNAGPDVAVKSPSPGFVG GYSVNKRQTNRGKESY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10012348 [exp]	0	1
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10006396 [exp]	1.4	0.9390
AT4G12650			Endomembrane protein 70 protei...		Lus10016072 [exp]	5.1	0.9274
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	7.5	0.9177
AT1G24330			ARM repeat superfamily protein...		Lus10015801 [exp]	9.5	0.8898
AT2G41770			Protein of unknown function (D...		Lus10031076 [exp]	10.4	0.9202
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10000787 [exp]	10.7	0.9082
AT1G62020			Coatomer, alpha subunit (.1)		Lus10037539 [exp]	11.2	0.9050
AT2G01970			Endomembrane protein 70 protei...		Lus10031308 [exp]	14.4	0.8983
AT1G62020			Coatomer, alpha subunit (.1)		Lus10016481 [exp]	17.3	0.8925
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10038350 [exp]	17.7	0.8971

Compare expression of checked genes

Lus10012348 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.