Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35735 392 / 8e-135 Auxin-responsive family protein (.1) AT5G47530 371 / 7e-127 Auxin-responsive family protein (.1) AT4G17280 362 / 3e-123 Auxin-responsive family protein (.1) AT3G25290 345 / 1e-116 Auxin-responsive family protein (.1.2) AT4G12980 330 / 9e-111 Auxin-responsive family protein (.1) AT3G59070 261 / 7e-83 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT2G04850 198 / 2e-59 Auxin-responsive family protein (.1) AT5G48750 184 / 6e-56 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G07570 125 / 2e-32 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1) AT3G61750 103 / 3e-24 Cytochrome b561/ferric reductase transmembrane with DOMON related domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002274 [exp] 595 / 0 AT5G47530 432 / 4e-151 Auxin-responsive family protein (.1) Lus10001734 [exp] 589 / 0 AT5G47530 422 / 9e-147 Auxin-responsive family protein (.1) Lus10006398 [exp] 376 / 4e-130 AT5G47530 276 / 2e-91 Auxin-responsive family protein (.1) Lus10017564 [exp] 350 / 2e-118 AT5G47530 419 / 8e-146 Auxin-responsive family protein (.1) Lus10010498 [exp] 346 / 2e-116 AT5G47530 412 / 1e-142 Auxin-responsive family protein (.1) Lus10025877 [exp] 269 / 1e-87 AT3G25290 387 / 2e-134 Auxin-responsive family protein (.1.2) Lus10038225 [exp] 225 / 5e-72 AT3G25290 283 / 6e-95 Auxin-responsive family protein (.1.2) Lus10001162 [exp] 218 / 7e-67 AT2G04850 563 / 0.0 Auxin-responsive family protein (.1) Lus10001736 [exp] 214 / 2e-65 AT2G04850 559 / 0.0 Auxin-responsive family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G162000 [exp] 451 / 2e-158 AT5G47530 369 / 2e-126 Auxin-responsive family protein (.1) Potri.002G222700 [exp] 447 / 7e-157 AT5G35735 369 / 8e-126 Auxin-responsive family protein (.1) Potri.006G015000 [exp] 426 / 2e-148 AT5G47530 513 / 0.0 Auxin-responsive family protein (.1) Potri.016G010900 [exp] 415 / 4e-144 AT5G47530 498 / 8e-177 Auxin-responsive family protein (.1) Potri.010G156600 [exp] 410 / 3e-142 AT5G47530 497 / 2e-176 Auxin-responsive family protein (.1) Potri.010G156200 [exp] 391 / 5e-135 AT5G47530 472 / 1e-166 Auxin-responsive family protein (.1) Potri.002G249300 [exp] 347 / 3e-117 AT3G25290 452 / 6e-159 Auxin-responsive family protein (.1.2) Potri.001G031600 [exp] 322 / 9e-108 AT5G47530 312 / 7e-104 Auxin-responsive family protein (.1) Potri.019G095800 [exp] 322 / 9e-108 AT5G47530 310 / 7e-103 Auxin-responsive family protein (.1) Potri.013G118300 [exp] 320 / 8e-107 AT5G47530 305 / 7e-101 Auxin-responsive family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561 CL0328 [flax] [poplar] PF04526 [flax] [poplar] DUF568 Protein of unknown function (DUF568)
Representative CDS sequence Show only first row Show all	>Lus10012350 pacid=23176774 polypeptide=Lus10012350 locus=Lus10012350.g ID=Lus10012350.BGIv1.0 annot-version=v1.0 ATGGATAACAAGTTACTGAAAGGTTTAATCTTCTCTGGGATTCTCTTCCTCGCCATGTGTGCTTCTCCATCACAGGCTCAAACTTGCAACGGCCAAAGCT TCTCAAGAAACCAAGTCTACTCAACTTGCGTAGATCTCCCAGCTCTGAGCTCTTTCCTCCACTGGAACTTCCACCAAGCGAACAACACAGCAGACATAGC CTTCAGAAAGACTGGAACCACCACTTCAAGCTGGGTTTGCTGGGCACTCAACCCTTCAGGTGGAAGAATGTTGGGATCTCAGGCTCTGATTGCTTTTCAG CAGCCTAATGGTAGCATGACTGCCTACACAACTTCGGTTGATAGCATGACTCCAACTTTGACTCCCGGGAGCTTGAGCTTCCAGGTGTCCAATCTCATGG CTGAACATACCAATGGGGAGACCACCATTTTCGCCACTGTCCATCTCAATTCCAATCTCTTGTCCACTAACCAAGTTTGGCAAGAAGGTCCTCTGGCTAG TGGATCTCCTTCAGTGCATCCCACCAGTGGTGCTAATGTCCAATCCATTGGGACTATTGATTTCCAGACTGGTGCTACCACTGCTTCTGGAGGTGCTGGA AACTCAAGGCTCCGCAAGAGGAATACTCATGGAGTTCTGAGCGCAGTGAGTTGGGGAATTCTGATGCCACTGGGAGCAATTATAGCAAGGTACATGAAGG TGTTCAAGGCAGCAAACCCAGCATGGTTCTATCTCCACGTTGCTTGCCAATTGTCTGCTTACATCGTTGGGGTTGCTGGTTGGGGAACTGGTCTCAAACT TGGTAGCGACAGCGTTGGAGTTGAGTACAACAAGCACAGAAACATTGGCATCACCCTCTTCTGCTTTGGTACCCTTCAGATGTTTGCCCTGCTGTTGAGG CCAAAGCCAGACCACAAGTACAGACTGTACTGGAACATGTACCACTACGCCATCGGATACGCAACCATCAGTCTCAGCATCGCTAATGTCTACGAGGGAC TTGACATCCTCAACCCGGCCAAGAAATGGAAGACCGCTTACACCGCCATCATCATCGTGTTGGGGGCCATCGCTCTGGTGTTGGAAGCCATCACTTGGCT GATTGTGATCAAGAGGAAGCAGGCTGTTAATTCTGCTGATAAATATGCCAATGGTGGAGCTAATGGAAATGGTCACAGAACACATCAGGAGGCCTAA
AA sequence Show only first row Show all	>Lus10012350 pacid=23176774 polypeptide=Lus10012350 locus=Lus10012350.g ID=Lus10012350.BGIv1.0 annot-version=v1.0 MDNKLLKGLIFSGILFLAMCASPSQAQTCNGQSFSRNQVYSTCVDLPALSSFLHWNFHQANNTADIAFRKTGTTTSSWVCWALNPSGGRMLGSQALIAFQ QPNGSMTAYTTSVDSMTPTLTPGSLSFQVSNLMAEHTNGETTIFATVHLNSNLLSTNQVWQEGPLASGSPSVHPTSGANVQSIGTIDFQTGATTASGGAG NSRLRKRNTHGVLSAVSWGILMPLGAIIARYMKVFKAANPAWFYLHVACQLSAYIVGVAGWGTGLKLGSDSVGVEYNKHRNIGITLFCFGTLQMFALLLR PKPDHKYRLYWNMYHYAIGYATISLSIANVYEGLDILNPAKKWKTAYTAIIIVLGAIALVLEAITWLIVIKRKQAVNSADKYANGGANGNGHRTHQEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35735			Auxin-responsive family protei...		Lus10012350 [exp]	0	1
AT5G53250		AGP22, ATAGP22	arabinogalactan protein 22 (.1...		Lus10037436 [exp]	1.0	0.9296
AT5G13200			GRAM domain family protein (.1...		Lus10035154 [exp]	3.2	0.8652
AT2G30630			P-loop containing nucleoside t...		Lus10041167 [exp]	3.9	0.8845
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10027742 [exp]	5.1	0.8599
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Lus10032919 [exp]	5.8	0.9133
AT1G18210			Calcium-binding EF-hand family...		Lus10031345 [exp]	6.9	0.8912
AT5G47530			Auxin-responsive family protei...		Lus10006398 [exp]	7.7	0.8786
AT2G19130			S-locus lectin protein kinase ...		Lus10039732 [exp]	8.1	0.8361
AT5G13200			GRAM domain family protein (.1...		Lus10031986 [exp]	8.5	0.8712
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10003466 [exp]	8.7	0.8887

Compare expression of checked genes

Lus10012350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.