Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04780 184 / 1e-57 FLA7 FASCICLIN-like arabinoogalactan 7 (.1.2) AT5G60490 82 / 1e-18 FLA12 FASCICLIN-like arabinogalactan-protein 12 (.1) AT2G20520 81 / 8e-18 FLA6 FASCICLIN-like arabinogalactan 6 (.1) AT5G03170 78 / 7e-17 ATFLA11, FLA11, IRX13 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) AT1G03870 77 / 1e-16 FLA9 FASCICLIN-like arabinoogalactan 9 (.1) AT5G44130 72 / 7e-15 FLA13 FASCICLIN-like arabinogalactan protein 13 precursor (.1) AT3G46550 67 / 1e-12 FLA4, SOS5 salt overly sensitive 5, fasciclin-like arabinogalactan-protein 4, Fasciclin-like arabinogalactan family protein (.1) AT3G60900 58 / 1e-09 FLA10 FASCICLIN-like arabinogalactan-protein 10 (.1) AT2G45470 58 / 2e-09 AGP8, FLA8 FASCICLIN-like arabinogalactan protein 8 (.1) AT4G12730 41 / 0.0005 FLA2 FASCICLIN-like arabinogalactan 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006399 [exp] 267 / 6e-90 AT2G04780 226 / 9e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10002273 [exp] 217 / 3e-70 AT2G04780 233 / 2e-76 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10001733 [exp] 217 / 4e-70 AT2G04780 231 / 4e-76 FASCICLIN-like arabinoogalactan 7 (.1.2) Lus10017696 [exp] 84 / 7e-19 AT2G20520 244 / 2e-81 FASCICLIN-like arabinogalactan 6 (.1) Lus10033651 [exp] 82 / 3e-18 AT2G20520 234 / 2e-77 FASCICLIN-like arabinogalactan 6 (.1) Lus10002978 [exp] 78 / 6e-17 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036114 [exp] 76 / 5e-16 AT5G03170 191 / 3e-60 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10036111 [exp] 75 / 8e-16 AT5G03170 209 / 1e-67 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Lus10026499 [exp] 71 / 4e-14 AT5G03170 291 / 5e-100 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G162900 [exp] 211 / 1e-67 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.002G223300 [exp] 202 / 3e-64 AT2G04780 228 / 1e-74 FASCICLIN-like arabinoogalactan 7 (.1.2) Potri.013G120600 [exp] 86 / 8e-20 AT5G44130 182 / 3e-57 FASCICLIN-like arabinogalactan protein 13 precursor (.1) Potri.001G320800 [exp] 83 / 8e-19 AT5G60490 189 / 5e-60 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.016G088700 [exp] 79 / 2e-17 AT5G03170 203 / 2e-65 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.006G129200 [exp] 79 / 3e-17 AT5G03170 199 / 9e-64 ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FASCICLIN-like arabinogalactan-protein 11 (.1) Potri.019G093300 [exp] 76 / 3e-16 AT5G44130 173 / 9e-54 FASCICLIN-like arabinogalactan protein 13 precursor (.1) Potri.012G127900 [exp] 75 / 1e-15 AT5G60490 207 / 6e-67 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G015032 [exp] 74 / 2e-15 AT5G60490 179 / 2e-55 FASCICLIN-like arabinogalactan-protein 12 (.1) Potri.012G014966 [exp] 74 / 4e-15 AT5G60490 179 / 1e-55 FASCICLIN-like arabinogalactan-protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02469 [flax] [poplar] Fasciclin Fasciclin domain
Representative CDS sequence Show only first row Show all	>Lus10012351 pacid=23176797 polypeptide=Lus10012351 locus=Lus10012351.g ID=Lus10012351.BGIv1.0 annot-version=v1.0 ATGGAGTTTTCCGGCACATTCTTGGTCTTCTTCCTATTAGTTGTACTTTCATCAGTACCAACTGAATCCGCTACTAGTCCACCAGCTCCAATATCCTTCA GTCCAGCACCAGCACCAGCACCAACCTCTCCATACGTAAACCTTACAGATTTACTCTCCGTAGCAGGTCCATTCCACACATTCCTAAACTACCTCCAATC CACAAAAGTAATCGACACATTCCAGAACCAAGCCAACGACACCGATCACCAACAAGGGATCACCCTCTTCGTCCCTAAAGACAGCGCCTTTTTGAAGCTA AACAAGCCCCCTCTCCCTTCCTTATCAAATGTGTCATCAGACCAACTGAAGCAGATCATGCTGTTCCACGCCTTGCCGCACTACTACTCCTTTGCTGACT TCAAGAACCTCACTAGCAGCCCTGTCAGCACTTTTGCTGGCGCTGGACAGTTCGGCCTCAACTTCACCTATGTGTCTGGTTTGGTCAGGATCGATTCGGG TTGGAGTAAGACTAAGGTGACCAGCAGTGTCCACTCAACTGCACCTGTTGCTATTTACCAAGTTGATAAAGTCCTCCTACCAGAAGCTATCTTTGGCACT GATATCCCACCTATGCCTGCTCCTGCACCTGCTCCTGATGCCGGTCTAGCTCCTGCTGCAGATAGCCCATCTGCTGATGCCACTGCTAGGGGAGGGAAAG CTTCAGCATCATCATCATCATCAAGCTCTTCTGGTACTAGGTTTGGTGTGTGGATCCAGTTGGTGTTGGCTGTTTCAGGAGTGATTGTGTTGCTATTGTA A
AA sequence Show only first row Show all	>Lus10012351 pacid=23176797 polypeptide=Lus10012351 locus=Lus10012351.g ID=Lus10012351.BGIv1.0 annot-version=v1.0 MEFSGTFLVFFLLVVLSSVPTESATSPPAPISFSPAPAPAPTSPYVNLTDLLSVAGPFHTFLNYLQSTKVIDTFQNQANDTDHQQGITLFVPKDSAFLKL NKPPLPSLSNVSSDQLKQIMLFHALPHYYSFADFKNLTSSPVSTFAGAGQFGLNFTYVSGLVRIDSGWSKTKVTSSVHSTAPVAIYQVDKVLLPEAIFGT DIPPMPAPAPAPDAGLAPAADSPSADATARGGKASASSSSSSSSGTRFGVWIQLVLAVSGVIVLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10012351 [exp]	0	1
AT5G42860			unknown protein		Lus10009749 [exp]	1.7	0.8748
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027971 [exp]	2.0	0.8692
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Lus10022038 [exp]	3.7	0.7994
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10020647 [exp]	4.9	0.8214
AT1G45688			unknown protein		Lus10010232 [exp]	5.5	0.8359
AT5G14030			translocon-associated protein ...		Lus10031996 [exp]	9.3	0.7156
AT5G23340			RNI-like superfamily protein (...		Lus10013444 [exp]	10.8	0.8110
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10001947 [exp]	10.9	0.7904
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10005653 [exp]	11.1	0.7644
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10022465 [exp]	12.2	0.8105

Compare expression of checked genes

Lus10012351 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.