Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07880 300 / 1e-103 SCN1 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) AT1G62450 271 / 2e-92 Immunoglobulin E-set superfamily protein (.1) AT1G12070 256 / 1e-86 Immunoglobulin E-set superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006400 [exp] 433 / 4e-156 AT3G07880 313 / 1e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10001732 [exp] 351 / 6e-124 AT3G07880 310 / 6e-108 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10002272 [exp] 347 / 2e-122 AT3G07880 309 / 1e-107 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10003794 [exp] 297 / 5e-103 AT3G07880 306 / 2e-106 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10027327 [exp] 296 / 1e-102 AT3G07880 303 / 2e-105 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10039029 [exp] 291 / 1e-100 AT3G07880 300 / 5e-104 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Lus10010491 [exp] 267 / 4e-90 AT3G07880 274 / 9e-93 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G163000 [exp] 317 / 2e-110 AT3G07880 329 / 7e-115 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G223200 [exp] 307 / 2e-106 AT3G07880 328 / 2e-114 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.016G013700 [exp] 299 / 5e-103 AT3G07880 314 / 5e-109 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.006G010500 [exp] 298 / 1e-102 AT3G07880 317 / 5e-110 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G234600 [exp] 258 / 3e-87 AT3G07880 212 / 5e-69 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1) Potri.002G259200 [exp] 193 / 1e-61 AT3G07880 184 / 4e-58 SUPERCENTIPEDE1, Immunoglobulin E-set superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF02115 [flax] [poplar] Rho_GDI RHO protein GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Lus10012352 pacid=23176789 polypeptide=Lus10012352 locus=Lus10012352.g ID=Lus10012352.BGIv1.0 annot-version=v1.0 ATGGGTTTGGATGACAAGGACGAGGGGAAGAATGATGAGGTTGAGAGGCATCTGGAAAATGGGGATGAAAGTGCAGATAAGGAGTCAAAGCTCAGGAACC AATCTTCCATGGATAGAGCTGATGACGACGAGGATGAGGATGAAGTGGACGACAAACTTGAGCTTGGTCCTCAGTACACTCTCAAAGAACAGCTCGAGAA GGATAAGGATGATGAGAGCCTGAGGAAATGGAAGGAACAGCTCCTTGGAAGTGTGGATTTTGATAATATTGGAGAAATTCTTGACCCGGAAGTGAAAATT CTTAGCCTATCTATTGTATCTCCTGATAGAGCTGATATCGTCCTGGATATCCCCGAGGATGGAAAGCTAAAAGGCTCATGGTTTACTTTGAAAGAAGGCA GTGTTTACAAGTTGAAGTTTGCCTTCCAAGTTAGTAATAACATTGTATCTGGTCTCAAGTACACCAACACTGTCTGGAAAACTGGTGTCAAGGTTGATGG CACTAAGGAGATGCTTGGAACCTTCAGTCCTCAGCCAGAGGCTTACATATATGAGATGCCAGAAGAGGTCACTCCATCAGGCATGTTTGCTAGGGGATCG TATTCGGCTAGATCAAAGTTTGTTGATGATGATAACAAATGCTACTTGGAGATCAATTACACATTCGAGATCCGGAAAGAATGGGCAGCCACTACATGA
AA sequence Show only first row Show all	>Lus10012352 pacid=23176789 polypeptide=Lus10012352 locus=Lus10012352.g ID=Lus10012352.BGIv1.0 annot-version=v1.0 MGLDDKDEGKNDEVERHLENGDESADKESKLRNQSSMDRADDDEDEDEVDDKLELGPQYTLKEQLEKDKDDESLRKWKEQLLGSVDFDNIGEILDPEVKI LSLSIVSPDRADIVLDIPEDGKLKGSWFTLKEGSVYKLKFAFQVSNNIVSGLKYTNTVWKTGVKVDGTKEMLGTFSPQPEAYIYEMPEEVTPSGMFARGS YSARSKFVDDDNKCYLEINYTFEIRKEWAATT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10012352 [exp]	0	1
AT4G38495			unknown protein		Lus10004196 [exp]	7.5	0.6885
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10006400 [exp]	11.5	0.7633
AT3G57990			unknown protein		Lus10004184 [exp]	13.8	0.6796
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10017690 [exp]	14.0	0.7105
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10018001 [exp]	14.3	0.7285
AT4G00525			unknown protein		Lus10030386 [exp]	23.5	0.7215
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10015898 [exp]	24.7	0.6668
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	25.9	0.6757
AT1G08390			unknown protein		Lus10038152 [exp]	28.3	0.6801
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	31.1	0.7103

Compare expression of checked genes

Lus10012352 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.