Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002271 [exp] 39 / 0.0006 ND / Lus10001731 [exp] 39 / 0.001 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012353 pacid=23176817 polypeptide=Lus10012353 locus=Lus10012353.g ID=Lus10012353.BGIv1.0 annot-version=v1.0 ATGGCCACCGTTGAGGTTGTATCGGCGCAAACCGCATTCCAGGAGGAGAAACCCGAGGAAATAGCAGCGGCCGTCAAGGTCCGAGAGGAGGAGCCAGCGG CTGAGGTGGCAGCGGAGTCAACTCCTTCTCCGGCTCCAGCGGCTGCGGAAGTGCCAGAGAAGGAAGAAGAGAACAAGGAGATCACCACCACCGTCAAAGA AGAAGCAGCCGACGTGGCTCCGGAGCCCGCTGATGAAGAGGTAGTTGTTGAGACCACGAAAGAGGTGGTAGTGGTGGTGTCTGAAGAAACAGAAGCTGAA GAAGAAGTGGAGAAACGACCCGTTGCTTCTGAAGAGGAAACCACGTTGGAGGAGCCTGTCGTTATTGCTGTCGAGGAGGCAGCAGCGGCTGAGCCAGTGA CCGCGGCGGTACCAGCGGCCGGCGACGGGAGCCAAGGGGGTCCGGAGGGGGGGAGGGGTCCGGAGGAGGAGAAGGTGGTTGAAGCAGCGGAAGAATCGGT TGTAACGACTAAGTGA
AA sequence Show only first row Show all	>Lus10012353 pacid=23176817 polypeptide=Lus10012353 locus=Lus10012353.g ID=Lus10012353.BGIv1.0 annot-version=v1.0 MATVEVVSAQTAFQEEKPEEIAAAVKVREEEPAAEVAAESTPSPAPAAAEVPEKEEENKEITTTVKEEAADVAPEPADEEVVVETTKEVVVVVSEETEAE EEVEKRPVASEEETTLEEPVVIAVEEAAAAEPVTAAVPAAGDGSQGGPEGGRGPEEEKVVEAAEESVVTTK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012353 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10009859 [exp]	3.9	0.8369
AT1G52690		LEA7	LATE EMBRYOGENESIS ABUNDANT 7,...		Lus10013489 [exp]	8.1	0.8286
AT3G07090			PPPDE putative thiol peptidase...		Lus10038168 [exp]	17.7	0.7986
AT1G17100			SOUL heme-binding family prote...		Lus10001247 [exp]	24.1	0.6498
AT1G76060		EMB1793	EMBRYO DEFECTIVE 1793, LYR fam...		Lus10005621 [exp]	29.8	0.7613
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10010937 [exp]	32.7	0.7523
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10001657 [exp]	33.7	0.7411
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Lus10028319 [exp]	37.3	0.7437
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015668 [exp]	38.2	0.7528
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10008743 [exp]	44.5	0.7313

Compare expression of checked genes

Lus10012353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.