Plant FIBer expression Database

Lus10012354 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G04790 184 / 3e-60 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006402
[exp]
312 / 8e-111 AT2G04790 172 / 1e-55 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G162700
[exp]
210 / 2e-70 AT2G04790 184 / 5e-60 unknown protein
PFAM info
Representative CDS sequence
>Lus10012354 pacid=23176763 polypeptide=Lus10012354 locus=Lus10012354.g ID=Lus10012354.BGIv1.0 annot-version=v1.0
ATGGCGGGAAGTCATCATCAGCTGATCAAAGACGACATTTACGTGGCGGCAGTGCCCTTACGAGCCACCAAAGGACCTCCCCAGCTGCTCATGTCCGCCG
CTTACTCTCTCAATCTCAGCTGGGACTTGCAGCATTTCATGGTCATCATTCAACCCTCCACTAGCAACACCTCTCGCCAGCCTGTTGTTGTGTTTGATTT
TCAGCCAAAAGACCCGGAAAATTTGTTCACCGCCCTTGCAGTTATGTCTGGCAGATCAGTACCTGGGGAAGTTCTCCGTAGGAAGATGAAAAAGCTGCCC
AGGACTAAATGTTGGCACGTTGGTTCGACGTCACAGGATGCTGCCGAAGAAGTTGCTGCCGAGTTTGGTAAAAATTGGATCACTGAACTGAAAGTTGGCC
ATCATGACTGTCGTCACTACACAAATGGTTTGGTGGAGGCTCTCACTGGTGAGAAGTTAGTTCTAGAACAGCTGAGAAGAAGAAATGCGGCGAGGGAAGG
CCTTGTCAGCTGA
AA sequence
>Lus10012354 pacid=23176763 polypeptide=Lus10012354 locus=Lus10012354.g ID=Lus10012354.BGIv1.0 annot-version=v1.0
MAGSHHQLIKDDIYVAAVPLRATKGPPQLLMSAAYSLNLSWDLQHFMVIIQPSTSNTSRQPVVVFDFQPKDPENLFTALAVMSGRSVPGEVLRRKMKKLP
RTKCWHVGSTSQDAAEEVAAEFGKNWITELKVGHHDCRHYTNGLVEALTGEKLVLEQLRRRNAAREGLVS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G04790 unknown protein Lus10012354
[exp]
0 1
AT5G01410 PDX1, ATPDX1.3,... REDUCED SUGAR RESPONSE 4, ARAB... Lus10004812
[exp]
1.7 0.8923
AT1G79510 Uncharacterized conserved prot... Lus10001766
[exp]
3.7 0.9263
AT3G52740 unknown protein Lus10020614
[exp]
6.6 0.9092
AT4G00050 bHLH bHLH016, UNE10 unfertilized embryo sac 10, ba... Lus10042874
[exp]
8.1 0.8480
AT4G09350 NdhT, CRRJ NADH dehydrogenase-like comple... Lus10029740
[exp]
15.2 0.8844
AT1G79510 Uncharacterized conserved prot... Lus10009597
[exp]
16.1 0.8825
AT1G22430 GroES-like zinc-binding dehydr... Lus10004786
[exp]
18.3 0.8810
AT5G42800 M318, TT3, DFR dihydroflavonol 4-reductase (.... Lus10032369
[exp]
20.4 0.8528
AT4G25490 AP2_ERF DREB1B, CBF1, A... DRE BINDING PROTEIN 1B, C-repe... Lus10031654
[exp]
21.0 0.7563
AT1G60420 DC1 domain-containing protein ... Lus10017252
[exp]
22.3 0.8297

Lus10012354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.