Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1) AT4G12560 97 / 5e-22 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G06240 83 / 3e-17 F-box family protein (.1) AT3G23880 69 / 9e-13 F-box and associated interaction domains-containing protein (.1) AT3G23260 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) AT1G53550 63 / 8e-11 F-box family protein (.1) AT1G32420 61 / 4e-10 F-box and associated interaction domains-containing protein (.1) AT4G22390 60 / 8e-10 F-box associated ubiquitination effector family protein (.1) AT3G23960 53 / 2e-07 F-box and associated interaction domains-containing protein (.1) AT4G09190 52 / 4e-07 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006403 [exp] 588 / 0 AT3G07870 362 / 2e-124 F-box and associated interaction domains-containing protein (.1) Lus10036105 [exp] 197 / 6e-59 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1) Lus10012358 [exp] 161 / 3e-45 AT3G07870 181 / 3e-52 F-box and associated interaction domains-containing protein (.1) Lus10038606 [exp] 108 / 3e-26 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10026789 [exp] 104 / 3e-26 AT3G07870 102 / 7e-26 F-box and associated interaction domains-containing protein (.1) Lus10037892 [exp] 105 / 3e-25 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10038603 [exp] 99 / 9e-23 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10039024 [exp] 95 / 3e-21 AT4G12560 333 / 3e-111 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10012356 [exp] 88 / 9e-20 AT3G07870 126 / 7e-34 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G162600 [exp] 490 / 9e-174 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 485 / 8e-172 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.013G053301 [exp] 224 / 2e-70 AT3G07870 258 / 7e-83 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 127 / 6e-33 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 126 / 2e-32 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.008G215800 [exp] 113 / 1e-27 AT3G07870 101 / 3e-23 F-box and associated interaction domains-containing protein (.1) Potri.008G215901 [exp] 112 / 2e-27 AT3G07870 103 / 3e-24 F-box and associated interaction domains-containing protein (.1) Potri.011G137200 [exp] 110 / 9e-27 AT3G07870 94 / 1e-20 F-box and associated interaction domains-containing protein (.1) Potri.006G011400 [exp] 109 / 9e-27 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G216223 [exp] 107 / 3e-26 AT3G07870 93 / 4e-21 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF08268 [flax] [poplar] FBA_3 F-box associated domain
Representative CDS sequence Show only first row Show all	>Lus10012355 pacid=23176803 polypeptide=Lus10012355 locus=Lus10012355.g ID=Lus10012355.BGIv1.0 annot-version=v1.0 ATGCGTCTGCCGCTCCTGGAGAACTCTTGCAGCCGACCCACACCTCACACCCCCACCCCACCCCCAAAATTTTCCCCCCCCACCCGCCACGTCAGCGGCG GAGGATGTTCATCCACCGCAGCCGAAGACCCCTGCCTAATCCTCCACTGCGATTTCCCAATCAGGAACCAGCTTTACTTTGCCGATTTAGCAGCCGACGG CGACGAGAAACACCGTGTGAGGAGAATCCAGTCCCCGTTCTGGTCCGCCATGCCGGAATTCGACGTGATCGGATCCTGCAACGGGTTGCTCTGCCTCTCC GATTCGCTTTACGGCGACGCCCTCTACGTCTACAACCCTTTCTCAGGTAAACACCTCGAGCTGCCGAAATCTTCACGCTACGCGGACCAAGAAGTGGTCT TCGGATTCGGATTCCACCCGACGACAAAACAGTACAAGGTAATCAAAATCGTCTACTACAGAAACGCCGGGTCGACCCGACCCGGCCACCCGAGGTCGCG CAGGACGGTGTTCCCGTTATCAGAAGTTCAAATTCTGACGCTGGGTTCTCCCGAATGGAGAATCCAGGGCCGCATATCTCACCAGCTGGTCCGCCGGCCG GGAGAGGCGCTTGTGAACGGGAGGATCCATTGGGTGACCCGGCCGCAGCGGTACAACCCGGTTCGGCGAGTGGTTTCGTTCGATTTGGGTGATGAGCAGT TCAGGGAAGTGGCCAAACCGAGTAGCGGCGGGTTGAGCAGGTGTAATTTCACACTGGTGGCGGTGAAGTCGTGTCTGGCGGCGGCGGTTTACTGCAACTA TGGGAGATTGGAGATCTGGGTGATGAAGGAGTACAATGTAAAGGAATCGTGGGTGAAGGAGTTTAGCATCGGGGCTTACATGCCTAAGGGGTTGAAGCAG AACTTTGAGATCAGGTCATACAAGATATGGCGGACCGGCTTTAATGGACGGGTTCGGGTTCTTGGGTTCCTGAAGAATGGGGAGATTTTGTTGGAGTATA AGAGCAGAGTGTTGGTTTGTTACGATGACAAGAATGGTAAGTTTAGTGATTTGAAATTGCAAGGTTTGCCTAAATGGTTCCAAGCAAATATTGTTGTTGG TTGCTTGAATTGGATTGACACTCCGCTTTACTAG
AA sequence Show only first row Show all	>Lus10012355 pacid=23176803 polypeptide=Lus10012355 locus=Lus10012355.g ID=Lus10012355.BGIv1.0 annot-version=v1.0 MRLPLLENSCSRPTPHTPTPPPKFSPPTRHVSGGGCSSTAAEDPCLILHCDFPIRNQLYFADLAADGDEKHRVRRIQSPFWSAMPEFDVIGSCNGLLCLS DSLYGDALYVYNPFSGKHLELPKSSRYADQEVVFGFGFHPTTKQYKVIKIVYYRNAGSTRPGHPRSRRTVFPLSEVQILTLGSPEWRIQGRISHQLVRRP GEALVNGRIHWVTRPQRYNPVRRVVSFDLGDEQFREVAKPSSGGLSRCNFTLVAVKSCLAAAVYCNYGRLEIWVMKEYNVKESWVKEFSIGAYMPKGLKQ NFEIRSYKIWRTGFNGRVRVLGFLKNGEILLEYKSRVLVCYDDKNGKFSDLKLQGLPKWFQANIVVGCLNWIDTPLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07870			F-box and associated interacti...		Lus10012355 [exp]	0	1
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023939 [exp]	2.0	0.8472
AT1G71780			unknown protein		Lus10040812 [exp]	3.5	0.8203
AT1G64140			unknown protein		Lus10032329 [exp]	3.5	0.8329
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10040669 [exp]	8.5	0.8232
AT1G57680			unknown protein		Lus10008842 [exp]	8.5	0.8066
AT1G54115		ATCCX4	cation calcium exchanger 4 (.1...		Lus10015668 [exp]	13.2	0.8183
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039659 [exp]	14.9	0.8155
AT5G64920		CIP8	COP1-interacting protein 8 (.1...		Lus10031422 [exp]	22.4	0.7816
AT1G26920			unknown protein		Lus10030488 [exp]	22.6	0.7612
AT1G03350			BSD domain-containing protein ...		Lus10042670 [exp]	25.3	0.8020

Compare expression of checked genes

Lus10012355 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.