Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07870 126 / 6e-34 F-box and associated interaction domains-containing protein (.1) AT3G16210 64 / 2e-11 F-box family protein (.1) AT3G17530 61 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT1G62270 58 / 1e-09 F-box and associated interaction domains-containing protein (.1) AT3G23880 57 / 2e-09 F-box and associated interaction domains-containing protein (.1) AT3G17480 56 / 7e-09 F-box and associated interaction domains-containing protein (.1) AT3G49450 56 / 8e-09 F-box and associated interaction domains-containing protein (.1) AT3G17540 56 / 1e-08 F-box and associated interaction domains-containing protein (.1) AT1G33530 55 / 2e-08 F-box family protein (.1) AT4G12560 52 / 1e-07 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012358 [exp] 358 / 2e-123 AT3G07870 181 / 3e-52 F-box and associated interaction domains-containing protein (.1) Lus10036105 [exp] 91 / 1e-20 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1) Lus10012355 [exp] 88 / 6e-20 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1) Lus10038603 [exp] 76 / 1e-15 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10006403 [exp] 74 / 2e-15 AT3G07870 362 / 2e-124 F-box and associated interaction domains-containing protein (.1) Lus10038606 [exp] 74 / 4e-15 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10037892 [exp] 71 / 1e-13 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10016866 [exp] 60 / 4e-10 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10018106 [exp] 60 / 4e-10 AT3G06240 95 / 3e-21 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G162600 [exp] 148 / 6e-42 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 137 / 5e-38 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.001G224200 [exp] 101 / 7e-25 AT3G07870 105 / 4e-25 F-box and associated interaction domains-containing protein (.1) Potri.013G053301 [exp] 97 / 3e-23 AT3G07870 258 / 7e-83 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 91 / 4e-21 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 91 / 1e-20 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 87 / 2e-19 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.001G318400 [exp] 81 / 1e-17 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.017G058900 [exp] 79 / 1e-16 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.011G121200 [exp] 78 / 2e-16 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10012356 pacid=23176809 polypeptide=Lus10012356 locus=Lus10012356.g ID=Lus10012356.BGIv1.0 annot-version=v1.0 ATGGAGGAAGCAGTACTGAAGAATGCAGCAGAAACCATGCGCGACAAGATGATTGTCAGTACTCTGCCTCGAGAAATCTTGATAGATATAATTTCAAGGC TGCCAGTGTCATCTCTGCTCCAAATCAAGCTCGTATGCAGAGCATGGCGCCACCTTCTTCAAGACCCTCACCTTCCTTCCCTCCATTTCTCCCGACTAAC AGCGAATCCGTCTCATCGCGGTACATCTTTGATTCTGCAGTCCAGGAGTTCTGCCAACAATGAGATCTACTTTCTAGATTTATCCAGTACTCGTGATAAC GCCGAACCGGAGCTGAAGAGGAAACTATCAGTTCCAACGATGATTCCCGGTTTTATTGTGTTGGGTTCGTGCAGGGGGATTATGTGCTTAGCGAATGCAT CACATCGCGTGCCAATTTACATTTACAATCCCCTTCTCGCAGAGATGCAAGAGATTGCTAGGCACAAGTGCGGCCCAAGCTACATCCTCGGATTCGGCTT TCACCCAGCGATGAAAGAGTACAAATTAGTGACGGTTGCATCGATCTTAGAGAGAGCCTTTTTTCGGTTCCGAATATTTCCCGGCTCGGTTATATCAGTC TTGACCCTAGCGTCGACCAAGAATGCAACTAAGTCCAATGAGTCCACTAGCTGGAGAAGAATAGGCACGGTGCCATACCACTTCCTAAAGCAAACAAACC AAGTTCCCGTCTTGGGCCGACTTCATTGGGCTGCTCGTCGGAGAGACAACAGATCCTGA
AA sequence Show only first row Show all	>Lus10012356 pacid=23176809 polypeptide=Lus10012356 locus=Lus10012356.g ID=Lus10012356.BGIv1.0 annot-version=v1.0 MEEAVLKNAAETMRDKMIVSTLPREILIDIISRLPVSSLLQIKLVCRAWRHLLQDPHLPSLHFSRLTANPSHRGTSLILQSRSSANNEIYFLDLSSTRDN AEPELKRKLSVPTMIPGFIVLGSCRGIMCLANASHRVPIYIYNPLLAEMQEIARHKCGPSYILGFGFHPAMKEYKLVTVASILERAFFRFRIFPGSVISV LTLASTKNATKSNESTSWRRIGTVPYHFLKQTNQVPVLGRLHWAARRRDNRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07870			F-box and associated interacti...		Lus10012356 [exp]	0	1
AT4G26220			S-adenosyl-L-methionine-depend...		Lus10012913 [exp]	3.0	0.7170
					Lus10032915 [exp]	4.0	0.7730
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	6.0	0.7726
AT2G22180			hydroxyproline-rich glycoprote...		Lus10019667 [exp]	6.0	0.7700
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	9.8	0.7383
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	11.0	0.7383
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	12.0	0.7383
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	13.0	0.7383
AT2G15130			Plant basic secretory protein ...		Lus10026583 [exp]	15.5	0.7107
AT1G18010			Major facilitator superfamily ...		Lus10009413 [exp]	17.2	0.7126

Compare expression of checked genes

Lus10012356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.