Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07870 176 / 1e-50 F-box and associated interaction domains-containing protein (.1) AT3G16210 74 / 4e-14 F-box family protein (.1) AT4G12560 72 / 1e-13 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G06240 72 / 3e-13 F-box family protein (.1) AT1G51320 62 / 2e-10 F-box and associated interaction domains-containing protein (.1) AT1G33530 61 / 6e-10 F-box family protein (.1) AT3G17560 58 / 4e-09 F-box and associated interaction domains-containing protein (.1) AT3G17530 58 / 4e-09 F-box and associated interaction domains-containing protein (.1) AT3G51171 55 / 3e-08 F-box and associated interaction domains-containing protein (.1) AT1G32600 54 / 5e-08 F-box associated ubiquitination effector family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012356 [exp] 357 / 4e-123 AT3G07870 126 / 7e-34 F-box and associated interaction domains-containing protein (.1) Lus10012357 [exp] 204 / 1e-64 AT3G07870 77 / 1e-17 F-box and associated interaction domains-containing protein (.1) Lus10012355 [exp] 157 / 1e-43 AT3G07870 393 / 2e-135 F-box and associated interaction domains-containing protein (.1) Lus10006403 [exp] 135 / 2e-36 AT3G07870 362 / 2e-124 F-box and associated interaction domains-containing protein (.1) Lus10036105 [exp] 125 / 1e-31 AT3G07870 206 / 1e-61 F-box and associated interaction domains-containing protein (.1) Lus10038603 [exp] 95 / 7e-21 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10037892 [exp] 94 / 7e-21 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10038606 [exp] 92 / 5e-20 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10026789 [exp] 77 / 5e-16 AT3G07870 102 / 7e-26 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G162600 [exp] 215 / 2e-65 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.002G223000 [exp] 207 / 1e-62 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1) Potri.013G053301 [exp] 149 / 5e-41 AT3G07870 258 / 7e-83 F-box and associated interaction domains-containing protein (.1) Potri.011G037200 [exp] 114 / 8e-28 AT3G07870 134 / 6e-35 F-box and associated interaction domains-containing protein (.1) Potri.011G037312 [exp] 111 / 1e-26 AT3G07870 134 / 3e-35 F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 108 / 4e-26 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.017G058900 [exp] 106 / 2e-25 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.001G224200 [exp] 103 / 4e-24 AT3G07870 105 / 4e-25 F-box and associated interaction domains-containing protein (.1) Potri.006G011400 [exp] 100 / 4e-23 AT4G12560 142 / 2e-38 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.011G121200 [exp] 96 / 9e-22 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10012358 pacid=23176758 polypeptide=Lus10012358 locus=Lus10012358.g ID=Lus10012358.BGIv1.0 annot-version=v1.0 ATGGAGGAATCAGTACTGAAGAAAGCAGAAACTGTGAGCGACAAGGTGATAGTTATGAGTCTGCCTCGAGAAATCTTGATTGATATAATTTCAAGGCTTC CAGTCTCGTCGCTGCTCCAAATCAAGCTCGTCTGCAGAGCATGGCGCCACCTTCTTCAAGACCCTCACCTTCCCGGCCTCCATTTCTCCCGACTAACAAC GAATCCGTCTCGTGACGATCCATCTTTGATTCTGCAGTCCAGGAGTTCCTCCAACAACGAGATCTACTTCCTAGATTTATCTACTCTTAATAACGACGGG GACTCTCCCCCAGAGCTGAAGAAACTATCAGTTCCAGCAATGATTCCTGCATATATTATGTTGGGATCCTGCAGGGGGATTATGTGCTTAACAAATGCAT CACATCGCGTGGCAGTTTCCCTCTACAGCCCTCTTCTGTCGGAGATGAAAGAAATCCCCACCCCCAAGTGCGGCCCAAGCTACGTCTTGGGTTTTGGCTT TCACCATGCGACGAAAGAGTACAAAGTGGTGACGATCGCATCGGTCATCGACATAGCTTCCATCCGGTTCCGGACGGCGACATCTCCCGGTTCAGTTATT TCGGTCTTGACCCTACCAACCCGGAAGGCAAACGAGCCCAGTGAGCCCAACACCTGGAAAAGGTTGGGTTTGGTGCCATACCACTTCGTAAACCAGACCC ACCAAGTCCCCGTTGCGGGCCGACTTCATTGGGCTGCTCGCCGGAAAGATCCCCGATCCAGGAACCATCTGCTGATCGTGTCATTCGATCTGTCCGACGA GAGCATTGGGGAGGTCTCCACTGTACTGCCGATCTGCCGGTGCCCATGGAATTGTCACTGCAGGTTCGAGTTGATGGTTGTCGGGTTATGTCTCGGGATT GCAGAGTATAATGTCCTCGGGGAGATTAAGATATGGGTGATGAAAGAGTACGGCGTGGAGTCATCTTGGGTTAATGCGATAACAATTGATAAGGTTGATA CGTTAGGAAGGGAATTGGGACTACTTGAGACGACGTCGTTAAGTAATCCGGATGTAGTGCGGAGAACATCAGGCACTTATTTCCACATGACATCGGATTT CAGGGTGTTGTGGGTGTTGAAGAATGGGGAGGTGTTGTTGGAGTTCAAGAGGAGAGGTTTGGTTCGTTATGATCCGAGGAATGGCATTTTCGAGAATGTT TTGAGCAGCAGGGGTGGAGGAGAATTCTTGGTTGATGGGTTCAATGCAATTATTCATGAGGGTAGCTTTTGTGACATAGATTCATGTATCAACATGTAG
AA sequence Show only first row Show all	>Lus10012358 pacid=23176758 polypeptide=Lus10012358 locus=Lus10012358.g ID=Lus10012358.BGIv1.0 annot-version=v1.0 MEESVLKKAETVSDKVIVMSLPREILIDIISRLPVSSLLQIKLVCRAWRHLLQDPHLPGLHFSRLTTNPSRDDPSLILQSRSSSNNEIYFLDLSTLNNDG DSPPELKKLSVPAMIPAYIMLGSCRGIMCLTNASHRVAVSLYSPLLSEMKEIPTPKCGPSYVLGFGFHHATKEYKVVTIASVIDIASIRFRTATSPGSVI SVLTLPTRKANEPSEPNTWKRLGLVPYHFVNQTHQVPVAGRLHWAARRKDPRSRNHLLIVSFDLSDESIGEVSTVLPICRCPWNCHCRFELMVVGLCLGI AEYNVLGEIKIWVMKEYGVESSWVNAITIDKVDTLGRELGLLETTSLSNPDVVRRTSGTYFHMTSDFRVLWVLKNGEVLLEFKRRGLVRYDPRNGIFENV LSSRGGGEFLVDGFNAIIHEGSFCDIDSCINM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07870			F-box and associated interacti...		Lus10012358 [exp]	0	1
AT4G12010			Disease resistance protein (TI...		Lus10004075 [exp]	7.3	0.8540
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Lus10012147 [exp]	8.9	0.7798
AT3G61150	HD	HD-GL2-1, HDG1	HOMEODOMAIN-GLABRA2 1, homeodo...		Lus10031933 [exp]	16.9	0.8401
					Lus10021921 [exp]	18.0	0.7754
AT3G09280			unknown protein		Lus10021099 [exp]	22.4	0.7860
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10001447 [exp]	29.6	0.8220
AT3G14520		AtTPS18	Terpenoid cyclases/Protein pre...		Lus10002660 [exp]	29.7	0.8107
AT3G45070			P-loop containing nucleoside t...		Lus10033716 [exp]	34.8	0.7830
AT2G31085		AtCLE6, CLE6	CLAVATA3/ESR-RELATED 6 (.1)		Lus10000464 [exp]	57.1	0.7036
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10012002 [exp]	59.2	0.7587

Compare expression of checked genes

Lus10012358 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.