Plant FIBer expression Database

Lus10012359 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G35732 69 / 7e-16 unknown protein
AT2G04795 64 / 6e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006404
[exp]
146 / 9e-46 AT5G35732 82 / 1e-21 unknown protein
Lus10002270
[exp]
75 / 7e-18 AT5G35732 57 / 1e-11 unknown protein
Lus10001730
[exp]
67 / 1e-14 AT5G35732 50 / 6e-09 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G222900
[exp]
90 / 7e-24 AT5G35732 102 / 2e-29 unknown protein
Potri.014G162400
[exp]
82 / 6e-21 AT5G35732 96 / 5e-27 unknown protein
PFAM info
Representative CDS sequence
>Lus10012359 pacid=23176816 polypeptide=Lus10012359 locus=Lus10012359.g ID=Lus10012359.BGIv1.0 annot-version=v1.0
ATGTTGATCGACATACCAAATAATACTATATTCTATTCATTAATTTATGCATCCTCCTTGCCATTGATTCAGTGTAAAGCGACTCCAAAGAGTGGAAGTT
GGAGGAGGGTCGACAAGTGGGGGCGCATCCAACATCAACTCTCTTTAACTGCAAGGCCAGCTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGATGAACATGAGGGTAGTA
GTTGGTGATGACCATCAACAACAAGCGCACACGTTAAACAAGTTCTCTACGGTGGTGAGCCTGGTCCTTGTGCCGTTTTCGATCTTTGCTTGCCTCTCGC
AACCTCATGTCAATGGGGCGGACGGGATGTGGGCATCGGCGGAGCTTCCACGGCTCTCGGAGGTCAACCATCTAATGGTCAATGATAGCATGAGGTATGC
AATACTTATGTAG
AA sequence
>Lus10012359 pacid=23176816 polypeptide=Lus10012359 locus=Lus10012359.g ID=Lus10012359.BGIv1.0 annot-version=v1.0
MLIDIPNNTIFYSLIYASSLPLIQCKATPKSGSWRRVDKWGRIQHQLSLTARPAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGMNMRVV
VGDDHQQQAHTLNKFSTVVSLVLVPFSIFACLSQPHVNGADGMWASAELPRLSEVNHLMVNDSMRYAILM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G35732 unknown protein Lus10012359
[exp]
0 1
AT3G24040 Core-2/I-branching beta-1,6-N-... Lus10023687
[exp]
2.0 0.8930
AT1G17620 Late embryogenesis abundant (L... Lus10037638
[exp]
12.4 0.9000
AT2G38310 RCAR10, PYL4 regulatory components of ABA r... Lus10014239
[exp]
12.8 0.8890
AT2G17840 ERD7 EARLY-RESPONSIVE TO DEHYDRATIO... Lus10014132
[exp]
15.7 0.8775
AT5G58375 Methyltransferase-related prot... Lus10008585
[exp]
19.7 0.8773
AT3G21360 2-oxoglutarate (2OG) and Fe(II... Lus10025819
[exp]
19.8 0.8732
AT3G25590 unknown protein Lus10034409
[exp]
21.4 0.8820
AT1G24620 EF hand calcium-binding protei... Lus10028913
[exp]
21.8 0.8689
AT5G13810 Glutaredoxin family protein (.... Lus10039537
[exp]
22.0 0.8543
AT5G60570 Galactose oxidase/kelch repeat... Lus10037413
[exp]
25.1 0.8640

Lus10012359 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.