Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04842 1025 / 0 EMB2761 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) AT5G26830 410 / 8e-134 Threonyl-tRNA synthetase (.1) AT1G17960 230 / 5e-68 Threonyl-tRNA synthetase (.1) AT1G18130 72 / 2e-14 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005351 [exp] 403 / 3e-131 AT5G26830 1088 / 0.0 Threonyl-tRNA synthetase (.1) Lus10021402 [exp] 402 / 4e-131 AT5G26830 1093 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030841 [exp] 400 / 2e-130 AT5G26830 1007 / 0.0 Threonyl-tRNA synthetase (.1) Lus10030645 [exp] 385 / 3e-121 AT5G26830 946 / 0.0 Threonyl-tRNA synthetase (.1) Lus10006406 [exp] 232 / 5e-73 AT2G04842 203 / 6e-63 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Lus10030843 [exp] 165 / 4e-46 AT5G26830 248 / 2e-77 Threonyl-tRNA synthetase (.1) Lus10030644 [exp] 104 / 4e-26 AT1G17960 150 / 3e-44 Threonyl-tRNA synthetase (.1) Lus10017408 [exp] 46 / 0.0001 AT3G13530 1761 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G162200 [exp] 1057 / 0 AT2G04842 1089 / 0.0 EMBRYO DEFECTIVE 2761, threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative (.1) Potri.008G145600 [exp] 407 / 1e-132 AT5G26830 1100 / 0.0 Threonyl-tRNA synthetase (.1) Potri.010G096500 [exp] 362 / 5e-118 AT5G26830 827 / 0.0 Threonyl-tRNA synthetase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0458 [flax] [poplar] IIaaRS-ABD PF03129 [flax] [poplar] HGTP_anticodon Anticodon binding domain CL0040 [flax] [poplar] tRNA_synt_II PF00587 [flax] [poplar] tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T) CL0094 [flax] [poplar] Peptidase_ME PF07973 [flax] [poplar] tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain
Representative CDS sequence Show only first row Show all	>Lus10012360 pacid=23176799 polypeptide=Lus10012360 locus=Lus10012360.g ID=Lus10012360.BGIv1.0 annot-version=v1.0 ATGTTCATCCTTCATAGAATGGCTTCCTCTGTTCCCTCCATCGTCCCTTTCTCGCTTATACTCCCAAAACCACCACCGCCACTACCGCCACTTCTTCCCT TCGTTCACCGCCGCTTCCACTTGCCGTCGGAGTTCTTCTCAGTCAAAAGAAATGGCGGCGCCCGTTTCCTTTCTACCGTATCCGTGGCCACCGAGTCTGC TGTTGTTGCTCCCAGTGAGGAGGAAGAGGGGACACAGAAGGGGGAAGTGGCTGACAGAGTCGTGCTTCCCACTAACGACTCTTCCGATAAGCTACTACGA ATTAGACACACATGTGCTCATGTGATGGCCATGGCGGTTCAGAAGCTTTATCCTGAGGCGAAAGTGACGATTGGGCCGTGGATAGATAACGGCTTTTACT ACGATTTTGATATGGAGCCCTTGACTGATAAAGACCTCAAGAAGATTAAGAAAGAGATGGATCGGATCATTTCTCGGAAATTGCCACTTATTAGAGAAGA AGTTACTAGAGAAGAAGCTCATAAGAGGATAATGGCTAACAATGAACCTTACAAGTTGGAGATATTGGATAGCATACCGGCCGACCCTATTACCATCTAT CATATCGGTGAATATGAATCTACGGCTAGGGATACCGAATTTTCTGGCTGTTACCCAGGTGATGAATGGTGGGATCTCTGTGCTGGACCCCATGTCGAAA CCACGGGTAACATTAACCGAAAAGCTGTTGAACTTGAAACTGTTGCTGGTGCTTACTGGAGGGGGGACGTAAAGAGGGCAATGCTACAGAGAATCTATGG AACGGCTTGGGAGAGTGAAGAACAATTGAAGGCATATCTTCACTTCAAAGAGGAGGCAAAACGAAGGGACCACAGACGCATTGGCCAAGATCTTGATCTT TTCTCGATACAGGATGAGGCTGGTGGGGGTCTGGTCTTCTGGCATCCGAAAGGTGCCATTGTTAGACACATCATAGAGGATTCTTGGAAGAAGATTCATA TACATCGTGGTTACGATTTGTTGTATACTCCTCATGTCGCAAAGGCTGACCTCTGGAAAATCAGTGGTCATTTGGATTTCTACAAAGAGAATATGTTTGA TCAGATGGACATTGAAAACGAGCAATACCAACTCCGTCCCATGAATTGCCCGTACCATATTCTGGTTTACAAAAGGAAGCTTCATTCCTATCGCGACTTT CCAATCAGGGTCGCGGAGCTTGGAACAGTATACAGATACGAACTCTCTGGAAGCTTACACGGGCTGTTCCGTGTAAGAGGTTTCACTCAGGATGATGCTC ATATATTTTGTCTGGAAGATCAAATCAAGGATGAAATTCGTGGTGTCCTAGATCTTACGGAAGAGATACTATTGCAATTTGGTTTCCACAGGTATGAAGT AAACCTCTCTACTAGGCCTGAGAAAGCTGTTGGAGATGATCATATATGGGAGAAAGCAACATGTGCTCTCAAGGATGCTTTGGATGACAAAGGATGGCCC TATCAAGTTGATGAAGGAGGTGGTGCTTTCTATGGCCCCAAGATAGACCTTAAAATCGAGGATGCTCTTGGTAGGAAATGGCAGTGTTCAACCATACAGG TTGATTTCAATTTACCTCAGCGGTTTGACATTACTTACCATGATGCTAACCAAGAGAAGAAGCAGCCAATCATGATCCACAGAGCGGTACTTGGATCGTT AGAACGGTTTTTCGGAGTCCTCATAGAGCATTATGCCGGGGACTTCCCGCTGTGGCTTGCCCCGGTACAACTTGACTACTGCCGCAAAATCGCCAGCGAA CTGAAGCAGCATGGCATTCGAGCTGAACTCTGCCATGGGGAAAGGCTGCCGAAGCTTATAAGGAATGCAGAGAAGCAGAAAACTCCCCTGATGGCGGTGG TTGGTCCTAAGGAAGTTGAGACGCAAACAGTTACAGTTAGATCTAGGTTTGCTGGGGAACTGGGGACCTTGGAAATTGACGATTTTATCGGCAAAATCAA GAATGTCTGTGATAATAGAAGTTCACTTTGA
AA sequence Show only first row Show all	>Lus10012360 pacid=23176799 polypeptide=Lus10012360 locus=Lus10012360.g ID=Lus10012360.BGIv1.0 annot-version=v1.0 MFILHRMASSVPSIVPFSLILPKPPPPLPPLLPFVHRRFHLPSEFFSVKRNGGARFLSTVSVATESAVVAPSEEEEGTQKGEVADRVVLPTNDSSDKLLR IRHTCAHVMAMAVQKLYPEAKVTIGPWIDNGFYYDFDMEPLTDKDLKKIKKEMDRIISRKLPLIREEVTREEAHKRIMANNEPYKLEILDSIPADPITIY HIGEYESTARDTEFSGCYPGDEWWDLCAGPHVETTGNINRKAVELETVAGAYWRGDVKRAMLQRIYGTAWESEEQLKAYLHFKEEAKRRDHRRIGQDLDL FSIQDEAGGGLVFWHPKGAIVRHIIEDSWKKIHIHRGYDLLYTPHVAKADLWKISGHLDFYKENMFDQMDIENEQYQLRPMNCPYHILVYKRKLHSYRDF PIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILLQFGFHRYEVNLSTRPEKAVGDDHIWEKATCALKDALDDKGWP YQVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDITYHDANQEKKQPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLAPVQLDYCRKIASE LKQHGIRAELCHGERLPKLIRNAEKQKTPLMAVVGPKEVETQTVTVRSRFAGELGTLEIDDFIGKIKNVCDNRSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10012360 [exp]	0	1
AT3G17670			tetratricopeptide repeat (TPR)...		Lus10007446 [exp]	1.7	0.8890
AT1G53440			Leucine-rich repeat transmembr...		Lus10038153 [exp]	2.4	0.8983
AT3G05625			Tetratricopeptide repeat (TPR)...		Lus10031474 [exp]	4.5	0.9034
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Lus10012713 [exp]	7.1	0.8405
AT1G53440			Leucine-rich repeat transmembr...		Lus10042505 [exp]	9.8	0.8546
AT4G01060	MYB	CPL3, ETC3	ENHANCER OF TRY AND CPC 3, CAP...		Lus10005949 [exp]	10.7	0.8800
AT1G61600			Protein of unknown function (D...		Lus10031916 [exp]	10.8	0.8810
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10031540 [exp]	11.5	0.8769
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10027363 [exp]	20.0	0.8594
					Lus10025700 [exp]	21.2	0.8141

Compare expression of checked genes

Lus10012360 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.