Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35700 827 / 0 FIM2, FIM5 FIMBRIN5, fimbrin-like protein 2 (.1) AT2G04750 799 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1) AT4G26700 751 / 0 ATFIM1 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) AT5G55400 733 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1) AT5G48460 707 / 0 Actin binding Calponin homology (CH) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006407 [exp] 1002 / 0 AT5G35700 842 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1) Lus10016580 [exp] 752 / 0 AT4G26700 986 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Lus10038235 [exp] 723 / 0 AT5G48460 1068 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1) Lus10014894 [exp] 718 / 0 AT4G26700 946 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Lus10025865 [exp] 680 / 0 AT5G48460 1013 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G163100 [exp] 875 / 0 AT5G35700 1028 / 0.0 FIMBRIN5, fimbrin-like protein 2 (.1) Potri.011G086500 [exp] 785 / 0 AT4G26700 1025 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Potri.001G360100 [exp] 785 / 0 AT4G26700 1019 / 0.0 ARABIDOPSIS THALIANA FIMBRIN 1, fimbrin 1 (.1.2.3) Potri.002G251600 [exp] 755 / 0 AT5G48460 1108 / 0.0 Actin binding Calponin homology (CH) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10012361 pacid=23176815 polypeptide=Lus10012361 locus=Lus10012361.g ID=Lus10012361.BGIv1.0 annot-version=v1.0 ATGTCCGGTTATGGTGTACTTGTATCTGATCCATGGCTTCAGAGCCAATTCACCCAAGTCCAGCTTCGGACCCTCAAATCCAAGTATGATTCGGTTAAGA ACGCGTCGGGTCGGGTCACGGTGGGGGATATGCCTGTTGTCTTCTCAAAGTTGAAGGCTTTCATTGATGTCTTTTCCGAGAATGATATCAGTGCTATGCT GCAAGAGTCGACTTCTAATATGGATGAGGAGATTGATTTTGAATCATTCCTTAGAGCCTACCTAAATTTACATGGACGAGCATCCATCAAATCCAAATCA GCAGGGAAGAAACTGGCAGGCTCCACTTCTTTCCTCAAGGCATCCACAACCACTTTCCACCACAATGTTAACGAATCTGAGAAGAATTCGTATGTGCAAC ATATTAATAAGCACTTGGCAGAAGATAAGTTCCTCAAGGACTATCTACCCATCGATCCCAACACGAACGCCTTGTTCGATCTCATCAAGAACGGAGTCCT TCTTTGTAAGCTAATCAATGTGGCTGTTCCTAACACCATAGATGAGCGTGCTATTAACACCAAAAAGGCCCTTAATCCATGGGAGAGAAACGAGAATCAT AACCTTTGCCTTAACTCTGCTAAGGCTATTGGATGTACTGTTGTCAATATTGGCACTCAGGATCTTGTTGAAGCTAGACCTCATCTAGTGCTTGGAATGA TATCCCAGATTGTTAAGATTCAACTGCTGGCTGATGTGAATATTAAGAGTACACCTGAACTACTTGAGTTGGTTGATGACAATGAGGAAGCGGAAGAGCT CATGAACTTAGCACCAGAGAAGGTTCTGTTGAAATGGATGAATTTTCATTTGAAAAAGGCTGGATATTCAAAGCAAGTTACAAACTTTTCTTCTGATGTC AAGGATGGAGAGGCATATGCTTACCTCCTTACTGCTCTAGCACCAGAACTCAGTACCAATAGTTCCATAGAAGTTATGGATCCCACAGAAAGGGCAAATA TGGTTATTGAGCAGGCAGAAAAATTGGAGTGTAGCAAATACCTCACTCCCACCGACATTGTCGAGGGATCAGCTCATCTCAACAAACTTCTAGGGAAGAG AGATGCTTCCGGCTTTGGATTAACAGTCTCGGAATACCTACTTACTGCAACAATGTTTTTGACGATGTCAGGAATGGTTTCATCGGGATCAGTTAACTGG AAGCTGGCAACCAAGCCTCCCATTAAGATGCCATTCAGAAAGGTTGAGAATTGTAACCAGGTCATTCAGATAGGGAAGGATTTGCATTTCTCCCTTGTGA ATGTTGCTGGGAATGACATTGTCCAAGGAAACAAGAAGCTTATAATAGCATATTTATGGCAACTAATGAGGTTCAGCATGCTTCAACTCCTGAGAAACTT GAGGGCTCACTCCTCAGAAGGTAAAGAGATAACGGATGCAGACATTCTGAACTGGGCTAACGACAAAGTGAAGAAGTCAGGGAAAACATCTCAAATGGAT AGCTTCAAGGATAAGAACCTTGCTACTGGGGTTTTCTTCCTGGAGCTTCTCAGTGCAGTGGAGCCAAGGGTGGTTAACTGGGAAGTCTGCACAGATGGAG GAACTGATGAGGATAAAAAGTTGAATGCAACCTACATCATCAGTGTTGCCAGGAAGCTTGGATGTTCCATCTTCTTGTTACCTGAGGACATCATGGAGGT GAACCAGAAGATGATCCTGATATTGACAGCCAGCATTATGTACTGGAGCCTGCAGCGTAAGGGTGGACATGCCTGCAATGCTCCTCTTGCCTCTGTGGCA TCCGAGGAGCATGATGAAGAAGCTGATGCTACTGCCGAAGAGCCCTCTGAATAG
AA sequence Show only first row Show all	>Lus10012361 pacid=23176815 polypeptide=Lus10012361 locus=Lus10012361.g ID=Lus10012361.BGIv1.0 annot-version=v1.0 MSGYGVLVSDPWLQSQFTQVQLRTLKSKYDSVKNASGRVTVGDMPVVFSKLKAFIDVFSENDISAMLQESTSNMDEEIDFESFLRAYLNLHGRASIKSKS AGKKLAGSTSFLKASTTTFHHNVNESEKNSYVQHINKHLAEDKFLKDYLPIDPNTNALFDLIKNGVLLCKLINVAVPNTIDERAINTKKALNPWERNENH NLCLNSAKAIGCTVVNIGTQDLVEARPHLVLGMISQIVKIQLLADVNIKSTPELLELVDDNEEAEELMNLAPEKVLLKWMNFHLKKAGYSKQVTNFSSDV KDGEAYAYLLTALAPELSTNSSIEVMDPTERANMVIEQAEKLECSKYLTPTDIVEGSAHLNKLLGKRDASGFGLTVSEYLLTATMFLTMSGMVSSGSVNW KLATKPPIKMPFRKVENCNQVIQIGKDLHFSLVNVAGNDIVQGNKKLIIAYLWQLMRFSMLQLLRNLRAHSSEGKEITDADILNWANDKVKKSGKTSQMD SFKDKNLATGVFFLELLSAVEPRVVNWEVCTDGGTDEDKKLNATYIISVARKLGCSIFLLPEDIMEVNQKMILILTASIMYWSLQRKGGHACNAPLASVA SEEHDEEADATAEEPSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10012361 [exp]	0	1
AT5G59790			Domain of unknown function (DU...		Lus10005887 [exp]	1.0	0.9547
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Lus10001988 [exp]	2.4	0.9450
AT5G38450		CYP735A1	"cytochrome P450, family 735, ...		Lus10033555 [exp]	4.9	0.9167
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10034643 [exp]	5.7	0.9277
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10006407 [exp]	6.2	0.9136
AT3G21710			unknown protein		Lus10027176 [exp]	7.4	0.9349
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10000615 [exp]	11.2	0.8822
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10012157 [exp]	13.5	0.9431
AT3G25600			Calcium-binding EF-hand family...		Lus10017900 [exp]	15.0	0.9160
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10012158 [exp]	17.1	0.9335

Compare expression of checked genes

Lus10012361 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.